Author details

Full Name

David Botstein

Affiliation

Calico Life Sciences LLC

ORCID

Career Start Year

1968

Papers

428

H Index

158

Expertise

CM4AI Collaborator

Trey Ideker (CM4AI)

PMID	Paper Title	Journal Title	Published Year
37235661	Global analysis of the yeast knockout phenome.	Sci Adv	2023
37235661	Global analysis of the yeast knockout phenome.	Sci Adv	2023
35119359	Novel insights from a multiomics dissection of the Hayflick limit.	Elife	2022
35119359	Novel insights from a multiomics dissection of the Hayflick limit.	Elife	2022
34096681	A genome-scale yeast library with inducible expression of individual genes.	Mol Syst Biol	2021
34096681	A genome-scale yeast library with inducible expression of individual genes.	Mol Syst Biol	2021
34668730	Loss of major nutrient sensing and signaling pathways suppresses starvation lethality in electron transport chain mutants.	Mol Biol Cell	2021
34668730	Loss of major nutrient sensing and signaling pathways suppresses starvation lethality in electron transport chain mutants.	Mol Biol Cell	2021
32470059	A tps1Î¿ persister-like state in Saccharomyces cerevisiae is regulated by MKT1.	PLoS One	2020
32470059	A tps1Î¿ persister-like state in Saccharomyces cerevisiae is regulated by MKT1.	PLoS One	2020
33023927	Perspective: Linkage Maps, Communities of Geneticists, and Genome Databases.	Genetics	2020
32631951	Fully Phased Sequence of a Diploid Human Genome Determined <i>de Novo</i> from the DNA of a Single Individual.	G3 (Bethesda)	2020
32631951	Fully Phased Sequence of a Diploid Human Genome Determined <i>de Novo</i> from the DNA of a Single Individual.	G3 (Bethesda)	2020
33023927	Perspective: Linkage Maps, Communities of Geneticists, and Genome Databases.	Genetics	2020
30834327	Minor Isozymes Tailor Yeast Metabolism to Carbon Availability.	mSystems	2019
30834327	Minor Isozymes Tailor Yeast Metabolism to Carbon Availability.	mSystems	2019
29444955	Common and divergent features of galactose-1-phosphate and fructose-1-phosphate toxicity in yeast.	Mol Biol Cell	2018
30240188	Discovery and Functional Characterization of a Yeast Sugar Alcohol Phosphatase.	ACS Chem Biol	2018
30093589	The future of humans as model organisms.	Science	2018
30421411	Simultaneous Profiling of DNA Accessibility and Gene Expression Dynamics with ATAC-Seq and RNA-Seq.	Methods Mol Biol	2018
29444955	Common and divergent features of galactose-1-phosphate and fructose-1-phosphate toxicity in yeast.	Mol Biol Cell	2018
30240188	Discovery and Functional Characterization of a Yeast Sugar Alcohol Phosphatase.	ACS Chem Biol	2018
30093589	The future of humans as model organisms.	Science	2018
30421411	Simultaneous Profiling of DNA Accessibility and Gene Expression Dynamics with ATAC-Seq and RNA-Seq.	Methods Mol Biol	2018
27077531	Genome-wide Purification of Extrachromosomal Circular DNA from Eukaryotic Cells.	J Vis Exp	2016
27077531	Genome-wide Purification of Extrachromosomal Circular DNA from Eukaryotic Cells.	J Vis Exp	2016
27789812	Systems-level analysis of mechanisms regulating yeast metabolic flux.	Science	2016
27789812	Systems-level analysis of mechanisms regulating yeast metabolic flux.	Science	2016
25918382	Characterizing the in vivo role of trehalose in Saccharomyces cerevisiae using the AGT1 transporter.	Proc Natl Acad Sci U S A	2015
25918382	Characterizing the in vivo role of trehalose in Saccharomyces cerevisiae using the AGT1 transporter.	Proc Natl Acad Sci U S A	2015
26038577	Extrachromosomal circular DNA is common in yeast.	Proc Natl Acad Sci U S A	2015
26281848	Analysis of Polygenic Mutants Suggests a Role for Mediator in Regulating Transcriptional Activation Distance in Saccharomyces cerevisiae.	Genetics	2015
26281848	Analysis of Polygenic Mutants Suggests a Role for Mediator in Regulating Transcriptional Activation Distance in Saccharomyces cerevisiae.	Genetics	2015
26038577	Extrachromosomal circular DNA is common in yeast.	Proc Natl Acad Sci U S A	2015
24445804	Synthetic biology tools for programming gene expression without nutritional perturbations in Saccharomyces cerevisiae.	Nucleic Acids Res	2014
24445804	Synthetic biology tools for programming gene expression without nutritional perturbations in Saccharomyces cerevisiae.	Nucleic Acids Res	2014
25215481	Laskerâ¿¼Koshland to genetics pioneer.	Cell	2014
25215481	Laskerâ¿¼Koshland to genetics pioneer.	Cell	2014
23135997	Decoupling nutrient signaling from growth rate causes aerobic glycolysis and deregulation of cell size and gene expression.	Mol Biol Cell	2013
24167267	Yeast metabolic and signaling genes are required for heat-shock survival and have little overlap with the heat-induced genes.	Proc Natl Acad Sci U S A	2013
23852385	A new system for comparative functional genomics of Saccharomyces yeasts.	Genetics	2013
24300440	Rapid synthesis and screening of chemically activated transcription factors with GFP-based reporters.	J Vis Exp	2013
23749449	Phylogenetic portrait of the Saccharomyces cerevisiae functional genome.	G3 (Bethesda)	2013
23793137	Visualization and analysis of mRNA molecules using fluorescence in situ hybridization in Saccharomyces cerevisiae.	J Vis Exp	2013
23873039	Pervasive genetic hitchhiking and clonal interference in forty evolving yeast populations.	Nature	2013
23275543	Synthetic gene expression perturbation systems with rapid, tunable, single-gene specificity in yeast.	Nucleic Acids Res	2013
23302932	Automating the construction of gene ontologies.	Nat Biotechnol	2013
23550140	Genetic Basis of Ammonium Toxicity Resistance in a Sake Strain of Yeast: A Mendelian Case.	G3 (Bethesda)	2013
23135997	Decoupling nutrient signaling from growth rate causes aerobic glycolysis and deregulation of cell size and gene expression.	Mol Biol Cell	2013
23171550	TOR and RAS pathways regulate desiccation tolerance in Saccharomyces cerevisiae.	Mol Biol Cell	2013

1 - 50 of 856

Jiewei Xu

Quantitative Biosciences Institute (QBI), University of California san francisco

Career Start Year 2012

Number of shared co-authors 2

Huiming Ding

Massachusetts Institute of Technology

Career Start Year 2003

Number of shared co-authors 12

Gordon Chua

University of Calgary

Career Start Year 2000

Number of shared co-authors 12

Ashkan Golshani

Ottawa Institute of Systems Biology, Carleton University

Career Start Year 1997

Number of shared co-authors 2

Patrice Menard

Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark

Career Start Year 1996

Number of shared co-authors 11

Tsuyoshi Miyake

University of Virginia School of Medicine

Career Start Year 1995

Number of shared co-authors 0

Christopher T Workman

Technical University of Denmark

Career Start Year 1995

Number of shared co-authors 3

Aim??e M Dudley

Pacific Northwest Research Institute

Career Start Year 1994

Number of shared co-authors 3

Robert J D Reid

Columbia University Vagelos College of Physicians & Surgeons

Career Start Year 1994

Number of shared co-authors 0

Christopher J Roberts

School of Pharmacy, University of Nottingham

Career Start Year 1989

Number of shared co-authors 12

Marinella Gebbia

University of Toronto

Career Start Year 1989

Number of shared co-authors 12

John D Aitchison

Center for Global Infectious Disease Research, Seattle Children's Research Institute

Career Start Year 1988

Number of shared co-authors 4

Muh-Ching Yee

Stanford University

Career Start Year 1988

Number of shared co-authors 2

Kwang-Lae Hoe

Chungnam National University

Career Start Year 1987

Number of shared co-authors 5

Hiten D Madhani

University of California san francisco

Career Start Year 1986

Number of shared co-authors 7

Stanley Fields

University of Washington

Career Start Year 1985

Number of shared co-authors 16

Mark Johnston

University of Colorado School of Medicine

Career Start Year 1984

Number of shared co-authors 13

Bruce W Birren

Broad Institute of MIT and Harvard

Career Start Year 1983

Number of shared co-authors 26

Neil D Clarke

Yale-NUS College Singapore

Career Start Year 1981

Number of shared co-authors 2

Michael Shales

University of California, USA Quantitative Biosciences Institute (QBI) san francisco

Career Start Year 1980

Number of shared co-authors 9

Pamela A Silver

Harvard Medical School

Career Start Year 1979

Number of shared co-authors 10

Jef D Boeke

Institute for Systems Genetics, NYU School of Medicine

Career Start Year 1978

Number of shared co-authors 13

George M Church

Harvard Medical School

Career Start Year 1977

Number of shared co-authors 20

Jasper Rine

University of California berkeley

Career Start Year 1977

Number of shared co-authors 15

Rodney Rothstein

Columbia University Vagelos College of Physicians & Surgeons

Career Start Year 1977

Number of shared co-authors 4

Stephen G Oliver

University of Cambridge

Career Start Year 1976

Number of shared co-authors 46

Philip Hieter

University of British Columbia

Career Start Year 1974

Number of shared co-authors 19

Antoine Danchin

University of Hong Kong

Career Start Year 1969

Number of shared co-authors 5

David Schlessinger

NIH/National Institute of Ageing

Career Start Year 1960

Number of shared co-authors 16

Thomas E Wilson

University of Michigan ann arbor

Career Start Year 1955

Number of shared co-authors 0

row(s) 1 - 30 of 30

Kara Dolinski

Lewis-Sigler Institute for Integrative Genomics, Princeton University

Co-authored papers 28

J Michael Cherry

Stanford University

Co-authored papers 27

Selina S Dwight

Stanford University School of Medicine

Co-authored papers 20

Michael B Eisen

Howard Hughes Medical Institute, University of California Berkeley

Co-authored papers 18

Shuai Weng

Stanford University

Co-authored papers 18

Gail Binkley

Stanford University

Co-authored papers 15

Catherine A Ball

Co-authored papers 14

Charles M Perou

Co-authored papers 14

Olga G Troyanskaya

Lewis-Sigler Institute for Integrative Genomics, Princeton University

Co-authored papers 14

Mark Schroeder

Co-authored papers 13

Dianna G Fisk

Stanford Medicine Clinical Genomics Program

Co-authored papers 12

Anand Sethuraman

Stanford University School of Medicine

Co-authored papers 11

Karen R Christie

Stanford University Medical School

Co-authored papers 11

Rama Balakrishnan

Genentech Inc.

Co-authored papers 10

Stacia R Engel

Stanford University

Co-authored papers 10

Eurie L Hong

Stanford University School of Medicine

Co-authored papers 10

Joshua D Rabinowitz

Lewis Sigler Institute for Integrative Genomics, Princeton University

Co-authored papers 10

Rose Oughtred

Lewis-Sigler Institute for Integrative Genomics, Princeton University

Co-authored papers 9

Midori A Harris

University of Cambridge

Co-authored papers 9

Maria C Costanzo

The Broad Institute of Harvard and MIT

Co-authored papers 9

Anne-Lise B??rresen-Dale

Institute for Cancer Research, Oslo University Hospital

Co-authored papers 9

Jodi E Hirschman

Broad Institute of MIT and Harvard

Co-authored papers 8

Jonathan R Pollack

Stanford University School of Medicine

Co-authored papers 8

Louis M Staudt

National Cancer Institute, National Institutes of Health

Co-authored papers 8

Robert S Nash

Stanford University

Co-authored papers 8

David G Drubin

University of California berkeley

Co-authored papers 7

David R Cox

Rinat (Pfizer Inc.)

Co-authored papers 7

Chandra L Theesfeld

Lewis-Sigler Institute for Integrative Genomics, Princeton University

Co-authored papers 7

Paul T Spellman

Oregon Health & Science University Hospital.

Co-authored papers 6

Yii-Der Ida Chen

Co-authored papers 6

1 - 30

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