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Author Details

Mark S Johnson
Abo Akademi University
1985
155
43
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36106955Canonical structural-binding modes in the calmodulin-target protein complexes.J Biomol Struct Dyn2023
36876139Comprehensive characterization of the embryonic factor LEUTX.iScience2023
35204684Examining the Effect of Charged Lipids on Mitochondrial Outer Membrane Dynamics Using Atomistic Simulations.Biomolecules2022
35402882<i>DUX4</i> is a multifunctional factor priming human embryonic genome activation.iScience2022
36421702An Evolutionary Perspective on the Origin, Conservation and Binding Partner Acquisition of Tankyrases.Biomolecules2022
36860695An Unbiased Functional Genetics Screen Identifies Rare Activating ERBB4 Mutations.Cancer Res Commun2022
36376313An extracellular receptor tyrosine kinase motif orchestrating intracellular STAT activation.Nat Commun2022
33323455Identification of Predictive <i>ERBB</i> Mutations by Leveraging Publicly Available Cell Line Databases.Mol Cancer Ther2021
33713772Structural leitmotif and functional variations of the structural catalytic core in (chymo)trypsin-like serine/cysteine fold proteinases.Int J Biol Macromol2021
33807850Structural Basis for the Functional Changes by EGFR Exon 20 Insertion Mutations.Cancers (Basel)2021
34774600Structural and functional significance of the amino acid differences Val<sub>35</sub>Thr, Ser<sub>46</sub>Ala, Asn<sub>65</sub>Ser, and Ala<sub>94</sub>Ser in 3C-like proteinases from SARS-CoV-2 and SARS-CoV.Int J Biol Macromol2021
32510498Deciphering the Structural Effects of Activating EGFR Somatic Mutations with Molecular Dynamics Simulation.J Vis Exp2020
32084230The acid-base-nucleophile catalytic triad in ABH-fold enzymes is coordinated by a set of structural elements.PLoS One2020
33058970Papain-like cysteine proteinase zone (PCP-zone) and PCP structural catalytic core (PCP-SCC) of enzymes with cysteine proteinase fold.Int J Biol Macromol2020
32717854Immunogenic SARS-CoV-2 Epitopes: In Silico Study Towards Better Understanding of COVID-19 Disease-Paving the Way for Vaccine Development.Vaccines (Basel)2020
32151723NBCZone: Universal three-dimensional construction of eleven amino acids near the catalytic nucleophile and base in the superfamily of (chymo)trypsin-like serine fold proteases.Int J Biol Macromol2020
32290360System Approach for Building of Calcium-Binding Sites in Proteins.Biomolecules2020
30311984Distinctive structural motifs co-ordinate the catalytic nucleophile and the residues of the oxyanion hole in the alpha/beta-hydrolase fold enzymes.Protein Sci2019
31351182Evolution and functional classification of mammalian copper amine oxidases.Mol Phylogenet Evol2019
30952700An unbiased <i>in vitro</i> screen for activating epidermal growth factor receptor mutations.J Biol Chem2019
30785944Molecular features of steroid-binding antidins and their use for assaying serum progesterone.PLoS One2019
29054403Top surface blade residues and the central channel water molecules are conserved in every repeat of the integrin-like β-propeller structures.J Struct Biol2018
28892296Tailored Approaches in Drug Development and Diagnostics: From Molecular Design to Biological Model Systems.Adv Healthc Mater2017
28426764Structural characterization of core-bradavidin in complex with biotin.PLoS One2017
28089868Novel calcium recognition constructions in proteins: Calcium blade and EF-hand zone.Biochem Biophys Res Commun2017
29173648In silico identification of milk antihypertensive di- and tripeptides involved in angiotensin I-converting enzyme inhibitory activity.Nutr Res2017
28974580SUMOylation regulates nuclear accumulation and signaling activity of the soluble intracellular domain of the ErbB4 receptor tyrosine kinase.J Biol Chem2017
29017922Building kit for metal cation binding sites in proteins.Biochem Biophys Res Commun2017
28811641Joint inflammation related citrullination of functional arginines in extracellular proteins.Sci Rep2017
28643343Alpha/beta-hydrolases: A unique structural motif coordinates catalytic acid residue in 40 protein fold families.Proteins2017
26050618Activating ERBB4 mutations in non-small cell lung cancer.Oncogene2016
26550684Artificial Avidin-Based Receptors for a Panel of Small Molecules.ACS Chem Biol2016
28024399Plasma Protein Binding of Anisomelic Acid: Spectroscopy and Molecular Dynamic Simulations.J Chem Inf Model2016
26923761Extracellular citrullination inhibits the function of matrix associated TGF-β.Matrix Biol2016
24632863A novel chimeric avidin with increased thermal stability using DNA shuffling.PLoS One2014
25409021Early chordate origin of the vertebrate integrin αI domains.PLoS One2014
25313560Two structural motifs within canonical EF-hand calcium-binding domains identify five different classes of calcium buffers and sensors.PLoS One2014
25023164Evolution of integrin I domains.Adv Exp Med Biol2014
24823363Citrullination of collagen II affects integrin-mediated cell adhesion in a receptor-specific manner.FASEB J2014
24204770Zebavidin--an avidin-like protein from zebrafish.PLoS One2013
22570421Active site opening and closure control translocation of multisubunit RNA polymerase.Nucleic Acids Res2012
23155467Probabilistic prediction of contacts in protein-ligand complexes.PLoS One2012
22574129Structure of bradavidin-C-terminal residues act as intrinsic ligands.PLoS One2012
21273074Discovery of dual binding site acetylcholinesterase inhibitors identified by pharmacophore modeling and sequential virtual screening techniques.Bioorg Med Chem Lett2011
27467261Molecular Docking Guided Comparative GFA, G/PLS, SVM and ANN Models of Structurally Diverse Dual Binding Site Acetylcholinesterase Inhibitors.Mol Inform2011
22022374Conservation of the human integrin-type beta-propeller domain in bacteria.PLoS One2011
21649638Involvement of the first transmembrane segment of human α(2) -adrenoceptors in the subtype-selective binding of chlorpromazine, spiperone and spiroxatrine.Br J Pharmacol2011
20020481Accurate conformation-dependent molecular electrostatic potentials for high-throughput in silico drug discovery.J Comput Chem2010
20126829A small-molecule inhibitor of integrin alpha2 beta1 introduces a new strategy for antithrombotic therapy.Thromb Haemost2010
19927126Molecular mechanism of alpha2beta1 integrin interaction with human echovirus 1.EMBO J2010
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Collaborators

Tom L Blundell
Heartand Lung Research Institute, University of Cambridge
Co-authored papers 16
John P Overington
Institute of Cardiovascular Science, University College London
Co-authored papers 11
Tommi H Nyr??nen
CSC - IT Center for Science Ltd
Co-authored papers 9
Andrej Sali (CM4AI)
University of California San Francisco
Co-authored papers 5
Vladimir N Uversky
Morsani College of Medicine, University of South Florida
Co-authored papers 5
Ramanathan Sowdhamini
Indian Institute of Science
Co-authored papers 3
John E Eriksson
Co-authored papers 3
Dan Donnelly
University of Leeds
Co-authored papers 2
Shintaro Katayama
Folkhalsan Research Center
Co-authored papers 2
Richard W Farndale
Co-authored papers 2
Juha Kere
Folkhalsan Research Center, University of Helsinki
Co-authored papers 2
Sirpa Jalkanen
Co-authored papers 2
Zhan-yang Zhu
Stanford University
Co-authored papers 2
Timo Otonkoski
Co-authored papers 2
Pasi Kankaanpää
Co-authored papers 2
Uwe Hansen
Co-authored papers 1
Hideya Kawaji
RIKEN Center for Integrative Medical Sciences
Co-authored papers 1
Pasi A J??nne
Dana-Farber Cancer Institute
Co-authored papers 1
Rommie E Amaro
University of California
Co-authored papers 1
Marko Salmi
Co-authored papers 1
Dennis J Hoover
Synaptic Dynamics Inc.
Co-authored papers 1
Jonathan B Cooper
University College London
Co-authored papers 1
Kaarel Krjutškov
Co-authored papers 1
John H Postlethwait
Co-authored papers 1
Paula Upla
Skirball Institute of Biomolecular Medicine, New York University School of Medicine
Co-authored papers 1
Gordon V Louie
The Howard Hughes Medical Institute, Salk Institute for Biological Studies
Co-authored papers 1
Kosuke Hashimoto
Kwansei Gakuin University
Co-authored papers 1
Release 1.2