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Author Details

Nadav Ahituv
University of California san francisco
1998
143
44
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37034704Multiplex, single-cell CRISPRa screening for cell type specific regulatory elements.bioRxiv2024
36824791Integrative single-cell characterization of frugivory adaptations in the bat kidney and pancreas.bioRxiv2023
37808807Best practices for perturbation MPRA-a computational evaluation framework of sequence design strategies.bioRxiv2023
37853125Chromatin compartmentalization regulates the response to DNA damage.Nature2023
38062027TAD evolutionary and functional characterization reveals diversity in mammalian TAD boundary properties and function.Nat Commun2023
37645832Characterization of enhancer activity in early human neurodevelopment using Massively parallel reporter assay (MPRA) and forebrain organoids.bioRxiv2023
38045264MPRAbase: A Massively Parallel Reporter Assay Database.bioRxiv2023
37974007Author Correction: Chromatin compartmentalization regulates the response to DNA damage.Nature2023
37292598Association of genetic variation in <i>COL11A1</i> with adolescent idiopathic scoliosis.bioRxiv2023
37090618Deletion of <i>Pax1</i> scoliosis-associated regulatory elements leads to a female-biased tail abnormality.bioRxiv2023
37090548Genetic regulation of cell-type specific chromatin accessibility shapes the etiology of brain diseases.bioRxiv2023
37087538Transcription factor binding site orientation and order are major drivers of gene regulatory activity.Nat Commun2023
36945527TAD Evolutionary and functional characterization reveals diversity in mammalian TAD boundary properties and function.bioRxiv2023
36945371Massively parallel characterization of transcriptional regulatory elements in three diverse human cell types.bioRxiv2023
37104607Three-dimensional genome rewiring in loci with human accelerated regions.Science2023
37101657Quasi-prime peptides: identification of the shortest peptide sequences unique to a species.NAR Genom Bioinform2023
37034710Implantation of engineered adipocytes that outcompete tumors for resources suppresses cancer progression.bioRxiv2023
37333267Impaired cerebellar plasticity hypersensitizes sensory reflexes in <i>SCN2A</i>-associated ASD.bioRxiv2023
36640767Machine learning dissection of human accelerated regions in primate neurodevelopment.Neuron2023
36834916Characterization of De Novo Promoter Variants in Autism Spectrum Disorder with Massively Parallel Reporter Assays.Int J Mol Sci2023
36824845Massively parallel characterization of psychiatric disorder-associated and cell-type-specific regulatory elements in the developing human cortex.bioRxiv2023
35022708Ancestry- and sex-specific effects underlying inguinal hernia susceptibility identified in a multiethnic genome-wide association study meta-analysis.Hum Mol Genet2022
35377806Cellular and transcriptional diversity over the course of human lactation.Proc Natl Acad Sci U S A2022
35573091High-throughput characterization of the role of non-B DNA motifs on promoter function.Cell Genom2022
35851062High-throughput techniques enable advances in the roles of DNA and RNA secondary structures in transcriptional and post-transcriptional gene regulation.Genome Biol2022
36777184Genomic characterization and therapeutic utilization of IL-13-responsive sequences in asthma.Cell Genom2022
36561188Milk antibody response after 3rd dose of COVID-19 mRNA vaccine and SARS-CoV-2 breakthrough infection and implications for infant protection.medRxiv2022
35897074Author Correction: High-throughput techniques enable advances in the roles of DNA and RNA secondary structures in transcriptional and post-transcriptional gene regulation.Genome Biol2022
35315433Massively parallel reporter perturbation assays uncover temporal regulatory architecture during neural differentiation.Nat Commun2022
33179741Genomic characterization of the adolescent idiopathic scoliosis-associated transcriptome and regulome.Hum Mol Genet2021
33762754Publisher Correction: Human-chimpanzee fused cells reveal cis-regulatory divergence underlying skeletal evolution.Nat Genet2021
33731941Human-chimpanzee fused cells reveal cis-regulatory divergence underlying skeletal evolution.Nat Genet2021
33863876Deletion of CTCF sites in the SHH locus alters enhancer-promoter interactions and leads to acheiropodia.Nat Commun2021
33885362The <i>cis</i>-regulatory effects of modern human-specific variants.Elife2021
34646010Oestrogen engages brain MC4R signalling to drive physical activity in female mice.Nature2021
34616060Single-cell epigenomics reveals mechanisms of human cortical development.Nature2021
34433494Absent from DNA and protein: genomic characterization of nullomers and nullpeptides across functional categories and evolution.Genome Biol2021
34804068COVID-19 mRNA Vaccination in Lactation: Assessment of Adverse Events and Vaccine Related Antibodies in Mother-Infant Dyads.Front Immunol2021
34228115Evaluation of Messenger RNA From COVID-19 BTN162b2 and mRNA-1273 Vaccines in Human Milk.JAMA Pediatr2021
33211865Asymmetron: a toolkit for the identification of strand asymmetry patterns in biological sequences.Nucleic Acids Res2021
33128032Author Correction: lentiMPRA and MPRAflow for high-throughput functional characterization of gene regulatory elements.Nat Protoc2021
31395945A novel ZRS variant causes preaxial polydactyly type I by increased sonic hedgehog expression in the developing limb bud.Genet Med2020
33046894A systematic evaluation of the design and context dependencies of massively parallel reporter assays.Nat Methods2020
32690705Co-option of the lineage-specific <i>LAVA</i> retrotransposon in the gibbon genome.Proc Natl Acad Sci U S A2020
33020616Modulating gene regulation to treat genetic disorders.Nat Rev Drug Discov2020
32641802lentiMPRA and MPRAflow for high-throughput functional characterization of gene regulatory elements.Nat Protoc2020
32170627Characterization of functional transposable element enhancers in acute myeloid leukemia.Sci China Life Sci2020
32427048Noncoding SNPs associated with increased GDF15 levels located in a metformin-activated enhancer region upstream of <i>GDF15</i>.Pharmacogenomics2020
30612741A Genome-wide Framework for Mapping Gene Regulation via Cellular Genetic Screens.Cell2019
31652254Dysregulation of STAT3 signaling is associated with endplate-oriented herniations of the intervertebral disc in Adgrg6 mutant mice.PLoS Genet2019
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Collaborators

Jay Shendure
University of Washington
Co-authored papers 16
Katherine S Pollard
Gladstone Institutes
Co-authored papers 11
Martin Kircher
Berlin Institute of Health (BIH) at Charite-Universitatsmedizin Berlin
Co-authored papers 10
Len A Pennacchio
Lawrence Berkeley National Laboratory
Co-authored papers 9
Nir Yosef
Center for Computational Biology, University of California berkeley
Co-authored papers 9
Kathleen M Giacomini
University of California San Francisco
Co-authored papers 6
Edward M Rubin
Co-authored papers 6
Vikram Agarwal
University of Washington
Co-authored papers 6
Max Schubach
Berlin Institute of Health of Health at Charite - Universitatsmedizin Berlin
Co-authored papers 5
Kimberly A Nevonen
Knight Cardiovascular Institute, Oregon Health and Science University
Co-authored papers 5
Sook Wah Yee
University of California San Francisco
Co-authored papers 5
Pui-Yan Kwok
Cardiovascular Research Institute, University of California San Francisco
Co-authored papers 5
Deanna L Kroetz
University of California San Francisco
Co-authored papers 5
Stephan J Sanders
Co-authored papers 4
Ruth McPherson
Co-authored papers 4
Loan Nguyen
Co-authored papers 4
Brian L Black
Cardiovascular Research Institute, University of California san francisco
Co-authored papers 4
Eric Jorgenson
Co-authored papers 4
Dmitri A Petrov
Stanford University
Co-authored papers 3
Kathleen C Keough
University of California San Francisco
Co-authored papers 3
Lucia Carbone
Knight Cardiovascular Institute, Oregon Health and Science University
Co-authored papers 3
Eirene Markenscoff-Papadimitriou
Co-authored papers 3
William Stafford Noble
Co-authored papers 3
Xujia Zhou
University of California san francisco
Co-authored papers 3
Pawel F Przytycki
Co-authored papers 3
Jie Yin
Co-authored papers 3
Stephanie Hesselson
Victor Chang Cardiac Research Institute
Co-authored papers 3
Susan J Johns
Center for Visualization, Washington State University
Co-authored papers 3
Tomasz J Nowakowski
University of California san francisco
Co-authored papers 3
Veena Afzal
Co-authored papers 3
Release 1.2