Author details

Full Name

Toshiaki Katayama

Affiliation

Database Center for Life Science

ORCID

Career Start Year

2004

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36509753	TogoVar: A comprehensive Japanese genetic variation database.	Hum Genome Var	2022
35801937	TogoID: an exploratory ID converter to bridge biological datasets.	Bioinformatics	2022
32379758	Ten simple rules to run a successful BioHackathon.	PLoS Comput Biol	2020
32308977	BioHackathon 2015: Semantics of data for life sciences and reproducible research.	F1000Res	2020
30624651	TogoGenome/TogoStanza: modularized Semantic Web genome database.	Database (Oxford)	2019
31278684	Sharing Programming Resources Between Bio* Projects.	Methods Mol Biol	2019
30576482	NBDC RDF portal: a comprehensive repository for semantic data in life sciences.	Database (Oxford)	2018
30068583	Corrigendum: Interactive transcriptome analysis of malaria patients and infecting <i>Plasmodium falciparum</i>.	Genome Res	2018
27924010	DNA Data Bank of Japan.	Nucleic Acids Res	2017
27296299	FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation.	J Biomed Semantics	2016
26578571	DNA data bank of Japan (DDBJ) progress report.	Nucleic Acids Res	2016
27602295	The health care and life sciences community profile for dataset descriptions.	PeerJ	2016
27649274	Extremotolerant tardigrade genome and improved radiotolerance of human cultured cells by tardigrade-unique protein.	Nat Commun	2016
25477381	The DDBJ Japanese Genotype-phenotype Archive for genetic and phenotypic human data.	Nucleic Acids Res	2015
25973165	Implementation of linked data in the life sciences at BioHackathon 2011.	J Biomed Semantics	2015
25675104	Novel mitochondria-targeted heat-soluble proteins identified in the anhydrobiotic Tardigrade improve osmotic tolerance of human cells.	PLoS One	2015
25638809	SPARQL-enabled identifier conversion with Identifiers.org.	Bioinformatics	2015
25723102	Gateways to the FANTOM5 promoter level mammalian expression atlas.	Genome Biol	2015
24495517	BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains.	J Biomed Semantics	2014
25472764	Community-driven development for computational biology at Sprints, Hackathons and Codefests.	BMC Bioinformatics	2014
25385078	PIERO ontology for analysis of biochemical transformations: effective implementation of reaction information in the IUBMB enzyme list.	J Bioinform Comput Biol	2014
25091627	Interactive transcriptome analysis of malaria patients and infecting Plasmodium falciparum.	Genome Res	2014
24829452	TogoTable: cross-database annotation system using the Resource Description Framework (RDF) data model.	Nucleic Acids Res	2014
24275496	CyanoBase and RhizoBase: databases of manually curated annotations for cyanobacterial and rhizobial genomes.	Nucleic Acids Res	2014
23193276	KEGG OC: a large-scale automatic construction of taxonomy-based ortholog clusters.	Nucleic Acids Res	2013
23762256	Analysis of DNA repair and protection in the Tardigrade Ramazzottius varieornatus and Hypsibius dujardini after exposure to UVC radiation.	PLoS One	2013
23398680	The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies.	J Biomed Semantics	2013
22399473	Sharing programming resources between Bio* projects through remote procedure call and native call stack strategies.	Methods Mol Biol	2012
22994508	The Ruby UCSC API: accessing the UCSC genome database using Ruby.	BMC Bioinformatics	2012
22937162	Two novel heat-soluble protein families abundantly expressed in an anhydrobiotic tardigrade.	PLoS One	2012
22951932	Comparative genome analysis of three eukaryotic parasites with differing abilities to transform leukocytes reveals key mediators of Theileria-induced leukocyte transformation.	mBio	2012
22332238	Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics.	Bioinformatics	2012
21930507	BioMart Central Portal: an open database network for the biological community.	Database (Oxford)	2011
21806842	The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications.	J Biomed Semantics	2011
20472643	TogoWS: integrated SOAP and REST APIs for interoperable bioinformatics Web services.	Nucleic Acids Res	2010
20727200	The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. The DBCLS BioHackathon Consortium*.	J Biomed Semantics	2010
20739307	BioRuby: bioinformatics software for the Ruby programming language.	Bioinformatics	2010
18987005	Full-Malaria/Parasites and Full-Arthropods: databases of full-length cDNAs of parasites and arthropods, update 2009.	Nucleic Acids Res	2009
18077471	KEGG for linking genomes to life and the environment.	Nucleic Acids Res	2008
18477636	KEGG Atlas mapping for global analysis of metabolic pathways.	Nucleic Acids Res	2008
17998252	AAindex: amino acid index database, progress report 2008.	Nucleic Acids Res	2008
16381885	From genomics to chemical genomics: new developments in KEGG.	Nucleic Acids Res	2006
16381886	ODB: a database of operons accumulating known operons across multiple genomes.	Nucleic Acids Res	2006
16374908	Utilizing evolutionary information and gene expression data for estimating gene networks with bayesian network models.	J Bioinform Comput Biol	2005
15507118	An interactive gene network for securin-separase, condensin, cohesin, Dis1/Mtc1 and histones constructed by mass transformation.	Genes Cells	2004

1 - 45 of 45

Cyrus Afrasiabi

The Scripps Research Institute

Career Start Year 2013

Number of shared co-authors 3

Marco Falda

University of Padova

Career Start Year 2012

Number of shared co-authors 2

Herv?? M??nager

Institut Francais de Bioinformatique

Career Start Year 2009

Number of shared co-authors 15

Salvador Capella-Gutierrez

Spanish National Bioinformatics Institute (INB/ELIXIR-ES)

Career Start Year 2009

Number of shared co-authors 19

Monica C Munoz-Torres

University of Colorado Anschutz Medical Campus

Career Start Year 2007

Number of shared co-authors 29

Allyson L Lister

Oxford e-Research Centre, University of Oxford

Career Start Year 2004

Number of shared co-authors 14

Ying Xu

The China-Japan Union Hospital, Jilin University

Career Start Year 2002

Number of shared co-authors 0

Don Gilbert

Indiana University

Career Start Year 2002

Number of shared co-authors 4

Kim Rutherford

University of Cambridge

Career Start Year 2000

Number of shared co-authors 9

Weizhong Li

J. Craig Venter Institute

Career Start Year 2000

Number of shared co-authors 0

Nicola Mulder

University of Cape Town

Career Start Year 1999

Number of shared co-authors 35

Andreas Prli??

University of California

Career Start Year 1999

Number of shared co-authors 18

Jon Ison

Institut Francais de Bioinformatique, CNRS

Career Start Year 1999

Number of shared co-authors 22

Alan Bridge

carnegie mellon university

Career Start Year 1998

Number of shared co-authors 11

Lars Juhl Jensen

Novo Nordisk Foundation Center for Protein Research, University of Copenhagen

Career Start Year 1998

Number of shared co-authors 5

Fabien Campagne

Weill Cornell Medical College

Career Start Year 1998

Number of shared co-authors 1

Iddo Friedberg

Iowa State University

Career Start Year 1997

Number of shared co-authors 10

Katherine Wolstencroft

Leiden Institute of Advanced Computer Science, Leiden University

Career Start Year 1997

Number of shared co-authors 32

Suzanna E Lewis

Lawrence Berkeley National Laboratory

Career Start Year 1996

Number of shared co-authors 36

Paul Kersey

European Bioinformatics Institute

Career Start Year 1995

Number of shared co-authors 22

Ioannis Xenarios

University of Lausanne

Career Start Year 1994

Number of shared co-authors 17

Maria J Martin

European Bioinformatics Institute (EMBL-EBI)

Career Start Year 1994

Number of shared co-authors 26

Terry Gaasterland

Scripps Institution of Oceanography, University of California San Diego

Career Start Year 1994

Number of shared co-authors 9

Cathy H Wu

Georgetown University Medical Center

Career Start Year 1992

Number of shared co-authors 9

Kei-Hoi Cheung

Yale University School of Medicine

Career Start Year 1992

Number of shared co-authors 7

Erik L L Sonnhammer

Stockholm University

Career Start Year 1992

Number of shared co-authors 6

Rolf Apweiler

European Bioinformatics Institute (EMBL-EBI)

Career Start Year 1990

Number of shared co-authors 29

Lincoln Stein

Ontario Institute for Cancer Research, University Avenue

Career Start Year 1986

Number of shared co-authors 30

Alfonso Valencia

Josep Carreras Leukaemia Research Institute (IJC)

Career Start Year 1986

Number of shared co-authors 30

Martin Kuiper

Norwegian University of Science and Technology

Career Start Year 1983

Number of shared co-authors 14

row(s) 1 - 30 of 30

Shuichi Kawashima

Database Center for Life Science, Joint Support-Center for Data Science Research

Co-authored papers 20

Raoul J P Bonnal

National Institute for Molecular Genetics "Romeo ed Enrica Invernizzi"

Co-authored papers 11

Takatomo Fujisawa

National Institute of Genetics

Co-authored papers 11

Pjotr Prins

Wageningen University & Research

Co-authored papers 10

Minoru Kanehisa

Co-authored papers 9

Jan Aerts

Co-authored papers 7

Yasunori Yamamoto

Database Center for Life Science, Joint Support-Center for Data Science Research

Co-authored papers 6

Rutger A Vos

Naturalis Biodiversity Center

Co-authored papers 6

Jerven Bolleman

carnegie mellon university - 1 rue Michel Servet CH-1 Geneva 4

Co-authored papers 6

Soichi Ogishima

Tohoku University Graduate School of Medicine

Co-authored papers 5

Mark D Wilkinson

Universidad Politecnica de Madrid (UPM)

Co-authored papers 5

Michel Dumontier

Institute of Data Science, Maastricht University

Co-authored papers 5

Kiyoko F Aoki-Kinoshita

Co-authored papers 5

Erick Antezana

Norwegian University of Science and Technology

Co-authored papers 4

Joachim Baran

Stanford Center for Biomedical Informatics Research, Stanford University

Co-authored papers 4

Francesco Strozzi

Fondazione Parco Tecnologico Padano

Co-authored papers 4

Peter J A Cock

James Hutton Institute

Co-authored papers 4

Chisato Yamasaki

Osaka University

Co-authored papers 4

Bruno Aranda

European Bioinformatics Institute

Co-authored papers 4

Hiromasa Ono

Database Center for Life Science

Co-authored papers 3

Keiichiro Ono

university of california san diego

Co-authored papers 3

Camille Laibe

European Bioinformatics Institute (EMBL-EBI)

Co-authored papers 3

Arek Kasprzyk

European Bioinformatics Institute (EBI)

Co-authored papers 3

Christopher J Mungall

International Society for Biocuration, Lawrence Berkeley National Laboratory, University of Edinburgh, University of Edinburgh School of Biological Sciences

Co-authored papers 3

Kozo Nishida

Japan Science and Technology Agency

Co-authored papers 3

Eri Kibukawa

Co-authored papers 3

Nick Juty

University of Manchester

Co-authored papers 3

Hidemasa Bono

Hiroshima University

Co-authored papers 3