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Author Details

Antoine Danchin
University of Hong Kong
1969
427
73
Gloria M Sheynkman (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36045561SynBio 2.0, a new era for synthetic life: Neglected essential functions for resilience.Environ Microbiol2023
37732760Recursive genome engineering decodes the evolutionary origin of an essential thymidylate kinase activity in <i>Pseudomonas putida</i> KT2440.mBio2023
37002859A model industrial workhorse: Bacillus subtilis strain 168 and its genome after a quarter of a century.Microb Biotechnol2023
37462943Science, method and critical thinking.Microb Biotechnol2023
34570957In vivo, in vitro and in silico: an open space for the development of microbe-based applications of synthetic biology.Microb Biotechnol2022
35584544Cysteine Dealkylation in <i>Bacillus subtilis</i> by a Novel Flavin-Dependent Monooxygenase.Biochemistry2022
35401572Computation of Antigenicity Predicts SARS-CoV-2 Vaccine Breakthrough Variants.Front Immunol2022
36852600Pasteur and "motivated" research.C R Biol2022
36066904The absence of the queuosine tRNA modification leads to pleiotropic phenotypes revealing perturbations of metal and oxidative stress homeostasis in Escherichia coli K12.Metallomics2022
35962852COVID-19 Adaptive Humoral Immunity Models: Weakly Neutralizing Versus Antibody-Disease Enhancement Scenarios.Acta Biotheor2022
35961013A roadmap for the functional annotation of protein families: a community perspective.Database (Oxford)2022
35199456Carbon metabolism and adaptation of hyperalkaliphilic microbes in serpentinizing spring of Manleluag, the Philippines.Environ Microbiol Rep2022
33129826Immunity after COVID-19: Protection or sensitization?Math Biosci2021
33769683SARS-CoV-2 biology and variants: anticipation of viral evolution and what needs to be done.Environ Microbiol2021
33650807Escherichia coli segments its controls on carbon-dependent gene expression into global and specific regulations.Microb Biotechnol2021
33805449A Strong Seasonality Pattern for Covid-19 Incidence Rates Modulated by UV Radiation Levels.Viruses2021
35174295Three overlooked key functional classes for building up minimal synthetic cells.Synth Biol (Oxf)2021
34379627Queuine, a bacterial-derived hypermodified nucleobase, shows protection in in vitro models of neurodegeneration.PLoS One2021
34620864Temporal evolution of master regulator Crp identifies pyrimidines as catabolite modulator factors.Nat Commun2021
34213850Biological innovation in the functional landscape of a model regulator, or the lactose operon repressor.C R Biol2021
32342578The importance of naturally attenuated SARS-CoV-2in the fight against COVID-19.Environ Microbiol2020
31998265Genomic Characterization of a Novel Gut Symbiont From the Hadal Snailfish.Front Microbiol2020
33375381A New Transmission Route for the Propagation of the SARS-CoV-2 Coronavirus.Biology (Basel)2020
33108121[Biochemical and statistical lessons from the evolution of the SARS-CoV-2 virus: paths for novel antiviral warfare].C R Biol2020
33125064A Path toward SARS-CoV-2 Attenuation: Metabolic Pressure on CTP Synthesis Rules the Virus Evolution.Genome Biol Evol2020
32908593Evaluating the probability of CRISPR-based gene drive contaminating another species.Evol Appl2020
32187416Isobiology: A Variational Principle for Exploring Synthetic Life.Chembiochem2020
32153134One-carbon metabolism, folate, zinc and translation.Microb Biotechnol2020
32153121Zinc, an unexpected integrator of metabolism?Microb Biotechnol2020
32150601Interpretable and accurate prediction models for metagenomics data.Gigascience2020
32552739Phylogenomics of expanding uncultured environmental Tenericutes provides insights into their pathogenicity and evolutionary relationship with Bacilli.BMC Genomics2020
32406115Visualizing the invisible: class excursions to ignite children's enthusiasm for microbes.Microb Biotechnol2020
32291894Cytosine drives evolution of SARS-CoV-2.Environ Microbiol2020
32367648SARS-CoV-2 variants: Relevance for symptom granularity, epidemiology, immunity (herd, vaccines), virus origin and containment?Environ Microbiol2020
30306718Revisiting the methionine salvage pathway and its paralogues.Microb Biotechnol2019
31659374Why Nature Chose Potassium.J Mol Evol2019
31303977Mutations in the Global Transcription Factor CRP/CAP: Insights from Experimental Evolution and Deep Sequencing.Comput Struct Biotechnol J2019
30806035Omnipresent Maxwell's demons orchestrate information management in living cells.Microb Biotechnol2019
30912268The urgent need for microbiology literacy in society.Environ Microbiol2019
30782313Hypothesis, analysis and synthesis, it's all Greek to me.Elife2019
30679363Toward unrestricted use of public genomic data.Science2019
30516032Conceptual sequel to biological expeditions at the time of global changes.Environ Microbiol Rep2019
30536863Deciphering global gene expression and regulation strategy in Escherichia coli during carbon limitation.Microb Biotechnol2019
29280348Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement.Microb Biotechnol2018
29806194No wisdom in the crowd: genome annotation in the era of big data - current status and future prospects.Microb Biotechnol2018
30526833[The origin of life revisited: from metabolites to cells].Med Sci (Paris)2018
30451680[Revisiting the origins of life: from atoms to molecules, reproduction, then replication].Med Sci (Paris)2018
29390076Unique tRNA gene profile suggests paucity of nucleotide modifications in anticodons of a deep-sea symbiotic Spiroplasma.Nucleic Acids Res2018
29727052Bacteria in the ageing gut: did the taming of fire promote a long human lifespan?Environ Microbiol2018
28032445Coping with inevitable accidents in metabolism.Microb Biotechnol2017
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Collaborators

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Co-authored papers 12
Icahn School of Medicine at Mount Sinai
Co-authored papers 11
University of Florida
Co-authored papers 6
Institut Francois Jacob, CNRS, Universite Paris-Saclay
Co-authored papers 5
Co-authored papers 4
Scripps Institution of Oceanography, University of California San Diego
Co-authored papers 3
Centre Medical Universitaire
Co-authored papers 3
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Institute for Genome Sciences, University of Maryland School of Medicine
Co-authored papers 2
Argonne National Laboratory
Co-authored papers 2
European Bioinformatics Institute
Co-authored papers 2
Peking Haidian Hospital Beijing
Co-authored papers 2
Los Alamos National Laboratory
Co-authored papers 2
Center for Algorithmic Biotechnology, Saint Petersburg State University
Co-authored papers 2
Experimental Research Center, China Academy of Chinese Medical Sciences
Co-authored papers 2
The Genome Center at Washington University, Washington University School of Medicine
Co-authored papers 2
Yong Loo Lin School of Medicine, National University of Singapore
Co-authored papers 2
Institute for Genome Sciences, University of Maryland School of Medicine
Co-authored papers 2
University of California
Co-authored papers 2
carnegie mellon university
Co-authored papers 2
Co-authored papers 2
Institute for Artificial Intelligence, University of Duisburg-Essen
Co-authored papers 2
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Institute for Integrative Systems Biology, Spanish National Research Council (CSIC)
Co-authored papers 2
Georgia Institute of Technology
Co-authored papers 2
Shanghai Institute of Materia Medica, Chinese Academy of Sciences
Co-authored papers 2
Institute of Molecular and Clinical Ophthalmology Basel (IOB)
Co-authored papers 2