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Author Details

Santiago J Carmona
AGORA Cancer Research Center
2008
36
19
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37081150Orthogonal cytokine engineering enables novel synthetic effector states escaping canonical exhaustion in tumor-rejecting CD8<sup>+</sup> T cells.Nat Immunol2023
37709986Activation of the transcription factor NFAT5 in the tumor microenvironment enforces CD8<sup>+</sup> T cell exhaustion.Nat Immunol2023
37586318A CSF-1R-blocking antibody/IL-10 fusion protein increases anti-tumor immunity by effectuating tumor-resident CD8<sup>+</sup> T cells.Cell Rep Med2023
37638293T Cell Clonal Analysis Using Single-cell RNA Sequencing and Reference Maps.Bio Protoc2023
34479871Low-Dose Radiotherapy Reverses Tumor Immune Desertification and Resistance to Immunotherapy.Cancer Discov2022
35803246Dissecting the treatment-naive ecosystem of human melanoma brain metastasis.Cell2022
35829695A CD4<sup>+</sup> T cell reference map delineates subtype-specific adaptation during acute and chronic viral infections.Elife2022
35963997Metacells untangle large and complex single-cell transcriptome networks.BMC Bioinformatics2022
35136964Characterization of ADAT2/3 molecules in Trypanosoma cruzi and regulation of mucin gene expression by tRNA editing.Biochem J2022
35258562scGate: marker-based purification of cell types from heterogeneous single-cell RNA-seq datasets.Bioinformatics2022
34747477SPICA: Swiss portal for immune cell analysis.Nucleic Acids Res2022
32845323STACAS: Sub-Type Anchor Correction for Alignment in Seurat to integrate single-cell RNA-seq data.Bioinformatics2021
33665637Prediction of neo-epitope immunogenicity reveals TCR recognition determinants and provides insight into immunoediting.Cell Rep Med2021
34739845Myeloid antigen-presenting cell niches sustain antitumor T cells and license PD-1 blockade via CD28 costimulation.Cancer Cell2021
34017005Interpretation of T cell states from single-cell transcriptomics data using reference atlases.Nat Commun2021
34285779UCell: Robust and scalable single-cell gene signature scoring.Comput Struct Biotechnol J2021
34335615APRANK: Computational Prioritization of Antigenic Proteins and Peptides From Complete Pathogen Proteomes.Front Immunol2021
32313720Deciphering the transcriptomic landscape of tumor-infiltrating CD8 lymphocytes in B16 melanoma tumors with single-cell RNA-Seq.Oncoimmunology2020
32174925Enhanced Phenotype Definition for Precision Isolation of Precursor Exhausted Tumor-Infiltrating CD8 T Cells.Front Immunol2020
30635237Intratumoral Tcf1<sup>+</sup>PD-1<sup>+</sup>CD8<sup>+</sup> T Cells with Stem-like Properties Promote Tumor Control in Response to Vaccination and Checkpoint Blockade Immunotherapy.Immunity2019
30870417Molecular and antigenic characterization of Trypanosoma cruzi TolT proteins.PLoS Negl Trop Dis2019
31043416MicroRNA-155 Expression Is Enhanced by T-cell Receptor Stimulation Strength and Correlates with Improved Tumor Control in Melanoma.Cancer Immunol Res2019
29177536Novel biotechnological platform based on baculovirus occlusion bodies carrying Babesia bovis small antigenic peptides for the design of a diagnostic enzyme-linked immunosorbent assay (ELISA).Appl Microbiol Biotechnol2018
28534222Identification of innate lymphoid cells in single-cell RNA-Seq data.Immunogenetics2017
28087841Single-cell transcriptome analysis of fish immune cells provides insight into the evolution of vertebrate immune cell types.Genome Res2017
28991925Next-generation ELISA diagnostic assay for Chagas Disease based on the combination of short peptidic epitopes.PLoS Negl Trop Dis2017
28961244High-resolution profiling of linear B-cell epitopes from mucin-associated surface proteins (MASPs) of Trypanosoma cruzi during human infections.PLoS Negl Trop Dis2017
25589551Mapping antigenic motifs in the trypomastigote small surface antigen from Trypanosoma cruzi.Clin Vaccine Immunol2015
25922409Towards High-throughput Immunomics for Infectious Diseases: Use of Next-generation Peptide Microarrays for Rapid Discovery and Mapping of Antigenic Determinants.Mol Cell Proteomics2015
24417889Characterization of Toxoplasma gondii subtelomeric-like regions: identification of a long-range compositional bias that is also associated with gene-poor regions.BMC Genomics2014
23904995Genome-wide analysis of 3'-untranslated regions supports the existence of post-transcriptional regulons controlling gene expression in trypanosomes.PeerJ2013
22116064TDR Targets: a chemogenomics resource for neglected diseases.Nucleic Acids Res2012
23272069Diagnostic peptide discovery: prioritization of pathogen diagnostic markers using multiple features.PLoS One2012
20808766Identification of attractive drug targets in neglected-disease pathogens using an in silico approach.PLoS Negl Trop Dis2010
18974180TcSNP: a database of genetic variation in Trypanosoma cruzi.Nucleic Acids Res2009
18927591Genomic-scale prioritization of drug targets: the TDR Targets database.Nat Rev Drug Discov2008
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Collaborators

Fern??n Ag??ero
Universidad Nacional de San Martin
Co-authored papers 14
Wesley C Van Voorhis
Center for Emerging and Re-emerging Infectious Diseases, University of Washington
Co-authored papers 3
Gregory J Crowther
Everett Community College
Co-authored papers 3
Melita Irving
Guy's and St Thomas' NHS Foundation Trust, Evelina Children's Hospital
Co-authored papers 3
David S Roos
University of Pennsylvania
Co-authored papers 3
Stuart A Ralph
Bio21 Molecular Science and Biotechnology Institute, University of Melbourne
Co-authored papers 3
Dhanasekaran Shanmugam
CSIR - National Chemical Laboratory
Co-authored papers 3
Christiane Hertz-Fowler
Institute of Integrative Biology, University of Liverpool
Co-authored papers 2
Solomon Nwaka
Institut fur Biochemie und Molekularbiologie, Universitat Freiburg
Co-authored papers 2
Matthew Berriman
Wellcome Sanger Institute
Co-authored papers 2
Maria A Doyle
Peter MacCallum Cancer Centre
Co-authored papers 2
Christophe L M J Verlinde
University of Washington
Co-authored papers 1
Andrej Sali (CM4AI)
University of California San Francisco
Co-authored papers 1
Takashi Suzuki
Co-authored papers 1
Mauro Delorenzi
Co-authored papers 1
Evan Z Macosko
Co-authored papers 1
Bissan Al-Lazikani
The University of Texas MD Anderson Cancer Center
Co-authored papers 1
Andrew L Hopkins
University of Dundee
Co-authored papers 1
Sylvain Pradervand
Co-authored papers 1
Giovanni Ciriello
University of Lausanne (UNIL)
Co-authored papers 1
Gregg McAllister
Co-authored papers 1
Hanina Hibshoosh
Co-authored papers 1
Ian M Carruthers
College of Life Sciences, University of Dundee
Co-authored papers 1
Feng Chen
Bayer Healthcare Pharmaceuticals
Co-authored papers 1
Iain C Macaulay
Co-authored papers 1
Aaron Riechers
Co-authored papers 1
Robert K Campbell
Serono Research Institute
Co-authored papers 1
Aw Edith Chan
The Walter and Eliza Hall Institute of Medical Research
Co-authored papers 1
Peter K Sorger
Co-authored papers 1
Brian M Baker
Co-authored papers 1
Release 1.2