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Author Details

Michael F Ochs
The College of New Jersey
1988
78
26
PMIDPaper TitleJournal TitlePublished Year
34376093Many ways to land upright: novel righting strategies allow spotted lanternfly nymphs to land on diverse substrates.J R Soc Interface2021
34376093Many ways to land upright: novel righting strategies allow spotted lanternfly nymphs to land on diverse substrates.J R Soc Interface2021
32401780Correction: Novel Insight into Mutational Landscape of Head and Neck Squamous Cell Carcinoma.PLoS One2020
32401780Correction: Novel Insight into Mutational Landscape of Head and Neck Squamous Cell Carcinoma.PLoS One2020
29342249Splice Expression Variation Analysis (SEVA) for inter-tumor heterogeneity of gene isoform usage in cancer.Bioinformatics2018
30143323Enter the Matrix: Factorization Uncovers Knowledge from Omics.Trends Genet2018
29342249Splice Expression Variation Analysis (SEVA) for inter-tumor heterogeneity of gene isoform usage in cancer.Bioinformatics2018
30143323Enter the Matrix: Factorization Uncovers Knowledge from Omics.Trends Genet2018
28716945Evaluating optimal therapy robustness by virtual expansion of a sample population, with a case study in cancer immunotherapy.Proc Natl Acad Sci U S A2017
28716945Evaluating optimal therapy robustness by virtual expansion of a sample population, with a case study in cancer immunotherapy.Proc Natl Acad Sci U S A2017
28174896PatternMarkers & GWCoGAPS for novel data-driven biomarkers via whole transcriptome NMF.Bioinformatics2017
28146432Integrative computational analysis of transcriptional and epigenetic alterations implicates DTX1 as a putative tumor suppressor gene in HNSCC.Oncotarget2017
28146432Integrative computational analysis of transcriptional and epigenetic alterations implicates DTX1 as a putative tumor suppressor gene in HNSCC.Oncotarget2017
28174896PatternMarkers & GWCoGAPS for novel data-driven biomarkers via whole transcriptome NMF.Bioinformatics2017
26884679Toward Signaling-Driven Biomarkers Immune to Normal Tissue Contamination.Cancer Inform2016
26884679Toward Signaling-Driven Biomarkers Immune to Normal Tissue Contamination.Cancer Inform2016
27650546CoGAPS matrix factorization algorithm identifies transcriptional changes in AP-2alpha target genes in feedback from therapeutic inhibition of the EGFR network.Oncotarget2016
27650546CoGAPS matrix factorization algorithm identifies transcriptional changes in AP-2alpha target genes in feedback from therapeutic inhibition of the EGFR network.Oncotarget2016
25381197An argument for mechanism-based statistical inference in cancer.Hum Genet2015
25857630NF-κB and stat3 transcription factor signatures differentiate HPV-positive and HPV-negative head and neck squamous cell carcinoma.Int J Cancer2015
25381197An argument for mechanism-based statistical inference in cancer.Hum Genet2015
26544568Outlier Analysis Defines Zinc Finger Gene Family DNA Methylation in Tumors and Saliva of Head and Neck Cancer Patients.PLoS One2015
26544568Outlier Analysis Defines Zinc Finger Gene Family DNA Methylation in Tumors and Saliva of Head and Neck Cancer Patients.PLoS One2015
25857630NF-κB and stat3 transcription factor signatures differentiate HPV-positive and HPV-negative head and neck squamous cell carcinoma.Int J Cancer2015
23318423A requirement for Nedd9 in luminal progenitor cells prior to mammary tumorigenesis in MMTV-HER2/ErbB2 mice.Oncogene2014
26356020Outlier Analysis and Top Scoring Pair for Integrated Data Analysis and Biomarker Discovery.IEEE/ACM Trans Comput Biol Bioinform2014
24127042Pathways of Toxicity.ALTEX2014
24351288Activation of the NOTCH pathway in head and neck cancer.Cancer Res2014
24233774The present state and future direction of integrated gene function analysis.Methods Mol Biol2014
23318423A requirement for Nedd9 in luminal progenitor cells prior to mammary tumorigenesis in MMTV-HER2/ErbB2 mice.Oncogene2014
24675808Expression microarray analysis reveals alternative splicing of LAMA3 and DST genes in head and neck squamous cell carcinoma.PLoS One2014
25162887Two clinical phenotypes in polycythemia vera.N Engl J Med2014
24667986Novel insight into mutational landscape of head and neck squamous cell carcinoma.PLoS One2014
25195578Correcting transcription factor gene sets for copy number and promoter methylation variations.Drug Dev Res2014
26356020Outlier Analysis and Top Scoring Pair for Integrated Data Analysis and Biomarker Discovery.IEEE/ACM Trans Comput Biol Bioinform2014
25195578Correcting transcription factor gene sets for copy number and promoter methylation variations.Drug Dev Res2014
25162887Two clinical phenotypes in polycythemia vera.N Engl J Med2014
24667986Novel insight into mutational landscape of head and neck squamous cell carcinoma.PLoS One2014
24675808Expression microarray analysis reveals alternative splicing of LAMA3 and DST genes in head and neck squamous cell carcinoma.PLoS One2014
24351288Activation of the NOTCH pathway in head and neck cancer.Cancer Res2014
24127042Pathways of Toxicity.ALTEX2014
24233774The present state and future direction of integrated gene function analysis.Methods Mol Biol2014
23372733ZNF-mediated resistance to imatinib mesylate in gastrointestinal stromal tumor.PLoS One2013
24223768Preferential activation of the hedgehog pathway by epigenetic modulations in HPV negative HNSCC identified with meta-pathway analysis.PLoS One2013
23440603Implications of systemic dysfunction for the etiology of malignancy.Gene Regul Syst Bio2013
23372733ZNF-mediated resistance to imatinib mesylate in gastrointestinal stromal tumor.PLoS One2013
23694699Identifying context-specific transcription factor targets from prior knowledge and gene expression data.IEEE Trans Nanobioscience2013
24223768Preferential activation of the hedgehog pathway by epigenetic modulations in HPV negative HNSCC identified with meta-pathway analysis.PLoS One2013
23694699Identifying context-specific transcription factor targets from prior knowledge and gene expression data.IEEE Trans Nanobioscience2013
23440603Implications of systemic dysfunction for the etiology of malignancy.Gene Regul Syst Bio2013
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Collaborators

Joseph A Califano
University of California
Co-authored papers 16
Alexander V Favorov
Johns Hopkins School of Medicine
Co-authored papers 15
Elana J Fertig
Johns Hopkins University School of Medicine
Co-authored papers 15
Daria A Gaykalova
Institute for Genome Sciences, University of Maryland School of Medicine
Co-authored papers 13
William H Westra
Icahn School of Medicine at Mount Sinai Hospital.
Co-authored papers 9
Andrew V Kossenkov
The Wistar Institute
Co-authored papers 7
Justin A Bishop
UT Southwestern Medical Center
Co-authored papers 7
Michael J Considine
Johns Hopkins University School of Medicine
Co-authored papers 6
Ryan Li
Oregon Health & Science University
Co-authored papers 5
Wayne M Koch
Johns Hopkins University School of Medicine
Co-authored papers 5
Giovanni Parmigiani
Dana Farber Cancer Institute.
Co-authored papers 5
Ludmila Danilova
Bloomberg-Kimmel Immunotherapy Institute, Johns Hopkins University School of Medicine
Co-authored papers 5
Theresa Guo
Moores Cancer Center, University of California
Co-authored papers 4
Genevieve L Stein-O'Brien
Johns Hopkins School of Medicine
Co-authored papers 4
Zubair Khan
University of Texas at Houston Health Science Center
Co-authored papers 4
Thomas D Moloshok
Fox Chase Cancer Center
Co-authored papers 4
Donald Geman
Johns Hopkins University
Co-authored papers 3
William Speier
University of California los angeles
Co-authored papers 3
Robert Gentleman
Center for Computational Biomedicine, Harvard Medical School
Co-authored papers 2
Jason D Howard
a Vaccinogen Inc.
Co-authored papers 2
Leslie Cope
Johns Hopkins University School of Medicine
Co-authored papers 2
Erica A Golemis
Co-authored papers 2
Josef Spidlen
British Columbia Cancer Research Center
Co-authored papers 1
Minoru Kanehisa
Co-authored papers 1
Albert J Fornace
Co-authored papers 1
Wayne Yu
Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University
Co-authored papers 1
Nathan D Price
Institute for Systems Biology
Co-authored papers 1
Michael Rosenberg
Co-authored papers 1
Soheil Meshinchi
Fred Hutchinson Cancer Research Centre
Co-authored papers 1
Kirk B Arvidson
Co-authored papers 1
Release 1.2