Author details

Full Name

Michael J Guertin

Affiliation

Center for Cell Analysis and Modeling, University of Connecticut

ORCID

Career Start Year

2010

Papers

H Index

Expertise

CM4AI Collaborator

Nathan Sheffield (CM4AI)

PMID	Paper Title	Journal Title	Published Year
36810156	Kinetic networks identify TWIST2 as a key regulatory node in adipogenesis.	Genome Res	2023
37698543	The Androgen Receptor Does Not Directly Regulate the Transcription of DNA Damage Response Genes.	Mol Cancer Res	2023
37274120	Correction of transposase sequence bias in ATAC-seq data with rule ensemble modeling.	NAR Genom Bioinform	2023
37461612	TRPS1 modulates chromatin accessibility to regulate estrogen receptor (ER) binding and ER target gene expression in luminal breast cancer cells.	bioRxiv	2023
36859531	ANKLE1 cleaves mitochondrial DNA and contributes to cancer risk by promoting apoptosis resistance and metabolic dysregulation.	Commun Biol	2023
36130957	Intrinsic bias estimation for improved analysis of bulk and single-cell chromatin accessibility profiles using SELMA.	Nat Commun	2022
33208463	Comparative interactomes of HSF1 in stress and disease reveal a role for CTCF in HSF1-mediated gene regulation.	J Biol Chem	2021
33992117	PEPPRO: quality control and processing of nascent RNA profiling data.	Genome Biol	2021
32757370	ARF-AID: A Rapidly Inducible Protein Degradation System That Preserves Basal Endogenous Protein Levels.	Curr Protoc Mol Biol	2020
31917388	Defining data-driven primary transcript annotations with primaryTranscriptAnnotation in R.	Bioinformatics	2020
31467088	An improved auxin-inducible degron system preserves native protein levels and enables rapid and specific protein depletion.	Genes Dev	2019
29126307	Universal correction of enzymatic sequence bias reveals molecular signatures of protein/DNA interactions.	Nucleic Acids Res	2018
29847804	Identification of Drivers of Aneuploidy in Breast Tumors.	Cell Rep	2018
30332327	Genetic and epigenetic determinants establish a continuum of Hsf1 occupancy and activity across the yeast genome.	Mol Biol Cell	2018
29672735	Parallel factor ChIP provides essential internal control for quantitative differential ChIP-seq.	Nucleic Acids Res	2018
29608647	BART: a transcription factor prediction tool with query gene sets or epigenomic profiles.	Bioinformatics	2018
28811569	Transcriptional response to stress is pre-wired by promoter and enhancer architecture.	Nat Commun	2017
28200020	Genome-Wide Identification of Basic Helix-Loop-Helix and NF-1 Motifs Underlying GR Binding Sites in Male Rat Hippocampus.	Endocrinology	2017
28957327	Up For A Challenge (U4C): Stimulating innovation in breast cancer genetic epidemiology.	PLoS Genet	2017
28957321	Identification of breast cancer associated variants that modulate transcription factor binding.	PLoS Genet	2017
27492368	Transcription factors GAF and HSF act at distinct regulatory steps to modulate stress-induced gene activation.	Genes Dev	2016
25815464	GAGA factor maintains nucleosome-free regions and has a role in RNA polymerase II recruitment to promoters.	PLoS Genet	2015
25051172	Transient estrogen receptor binding and p300 redistribution support a squelching mechanism for estradiol-repressed genes.	Mol Endocrinol	2014
25242143	DNase footprint signatures are dictated by factor dynamics and DNA sequence.	Mol Cell	2014
25211228	Targeted H3R26 deimination specifically facilitates estrogen receptor binding by modifying nucleosome structure.	PLoS Genet	2014
23266217	Mechanisms by which transcription factors gain access to target sequence elements in chromatin.	Curr Opin Genet Dev	2013
22479205	Accurate prediction of inducible transcription factor binding intensities in vivo.	PLoS Genet	2012
22853951	Peptidylarginine deiminase 2-catalyzed histone H3 arginine 26 citrullination facilitates estrogen receptor Î± target gene activation.	Proc Natl Acad Sci U S A	2012
20811586	A molecular analysis of mutations at the complex dumpy locus in Drosophila melanogaster.	PLoS One	2010
20844575	Chromatin landscape dictates HSF binding to target DNA elements.	PLoS Genet	2010
21467139	Drosophila heat shock system as a general model to investigate transcriptional regulation.	Cold Spring Harb Symp Quant Biol	2010

1 - 31 of 31

Sascha H Duttke

College of Veterinary Medicine, Washington State University

Career Start Year 2012

Number of shared co-authors 0

Anthony Mathelier

University of Oslo

Career Start Year 2010

Number of shared co-authors 0

Alan P Boyle

University of Michigan ann arbor

Career Start Year 2008

Number of shared co-authors 2

Robin Andersson

University of Copenhagen

Career Start Year 2007

Number of shared co-authors 0

Kristen Lee

Altius Institute for Biomedical Sciences

Career Start Year 2006

Number of shared co-authors 1

Lingyun Song

Center for Genomic & Computational Biology, Duke University

Career Start Year 2004

Number of shared co-authors 2

Anshul Kundaje

Stanford University.

Career Start Year 2004

Number of shared co-authors 4

Shyam Prabhakar

Genome Institute of Singapore (GIS)

Career Start Year 2004

Number of shared co-authors 0

Matthew T Weirauch

University of Cincinnati College of Medicine

Career Start Year 2003

Number of shared co-authors 3

Jason Gertz

Huntsman Cancer Institute, University of Utah

Career Start Year 2003

Number of shared co-authors 0

Alexias Safi

Center for Genomic and Computational Biology, Duke University Medical Center

Career Start Year 2003

Number of shared co-authors 1

Paul G Giresi

Center for Personal Dynamic Regulomes

Career Start Year 2003

Number of shared co-authors 1

Ho-Ryun Chung

Institute of Medical Bioinformatics and Biostatistics, Philipps University of Marburg

Career Start Year 2002

Number of shared co-authors 0

Michael J Buck

Jacobs School of Medicine and Biomedical Sciences, University at Buffalo

Career Start Year 2002

Number of shared co-authors 0

Albin Sandelin

University of Copenhagen

Career Start Year 2002

Number of shared co-authors 3

Terrence S Furey

University of North Carolina at Chapel Hill

Career Start Year 2000

Number of shared co-authors 2

Yoichiro Shibata

Center for Genomic and Computational Biology, Duke University.

Career Start Year 2000

Number of shared co-authors 1

Stefan Bekiranov

University of Virginia

Career Start Year 2000

Number of shared co-authors 3

Uwe Ohler

Humboldt University

Career Start Year 1999

Number of shared co-authors 1

Duncan T Odom

Cancer Research UK Cambridge Institute, University of Cambridge

Career Start Year 1999

Number of shared co-authors 0

Gregory E Crawford

Center for Genomic & Computational Biology, Duke University

Career Start Year 1999

Number of shared co-authors 3

William J Greenleaf

Stanford University

Career Start Year 1998

Number of shared co-authors 1

Fran??ois Robert

Institut de recherches cliniques de Montreal

Career Start Year 1996

Number of shared co-authors 0

Jason D Lieb

The University of Chicago

Career Start Year 1996

Number of shared co-authors 1

Boris Lenhard

MRC London Institute of Medical Sciences

Career Start Year 1996

Number of shared co-authors 1

Bing Ren

Center for Epigenomics, University of California San Diego

Career Start Year 1995

Number of shared co-authors 0

Vishwanath R Iyer

Indian Institute of Technology Bombay

Career Start Year 1995

Number of shared co-authors 1

Colin Logie

Radboud Institute for Molecular Science, Radboud University

Career Start Year 1995

Number of shared co-authors 0

John A Stamatoyannopoulos

Altius Institute for Biomedical Sciences

Career Start Year 1992

Number of shared co-authors 6

Frank C P Holstege

Princess Maxima Center for Pediatric Oncology

Career Start Year 1990

Number of shared co-authors 0

row(s) 1 - 30 of 30

Kizhakke M Sathyan

Center for Cell Analysis and Modeling, University of Connecticut

Co-authored papers 5

Gordon L Hager

National Cancer Institute, National Institutes of Health

Co-authored papers 4

Arun B Dutta

University of Virginia

Co-authored papers 3

Chongzhi Zang

Center for Public Health Genomics, University of Virginia

Co-authored papers 3

Mete Civelek

Center for Public Health Genomics, University of Virginia

Co-authored papers 3

Nathan Sheffield (CM4AI)

University of Virginia

Co-authored papers 2

Songjoon Baek

Center for Cancer Research, National Cancer Institute

Co-authored papers 2

Adam Siepel

Co-authored papers 2

Joellen M Schildkraut

Rollins School of Public Health, Emory University

Co-authored papers 1

Nancy J Cox

Vanderbilt University Medical Center

Co-authored papers 1

Myong-Hee Sung

National Institute on Aging, National Institutes of Health

Co-authored papers 1

Clifford A Meyer

Co-authored papers 1

Clint L Miller

University of Virginia

Co-authored papers 1

Stephen S Rich

Co-authored papers 1

Brad Marshall

Co-authored papers 1

Mikhail G Dozmorov

Virginia Commonwealth University

Co-authored papers 1

Leah E Mechanic

National Cancer Institute, National Institutes of Health

Co-authored papers 1

Florian Markowetz

CRUK Cambridge Institute, University of Cambridge

Co-authored papers 1

Adam Spencer

University of Virginia

Co-authored papers 1

Jason P Smith

Center for Public Health Genomics, University of Virginia

Co-authored papers 1

Christopher I Amos

Baylor College of Medicine

Co-authored papers 1

Scott M Williams

Case Western Reserve University School of Medicine

Co-authored papers 1

Kenneth Daily

Co-authored papers 1

David Pincus

Co-authored papers 1

Chad L Myers

University of Minnesota - Twin Cities

Co-authored papers 1

Zhenjia Wang

Beijing Hospital of Traditional Chinese Medicine, Capital Medical University

Co-authored papers 1

Stafford L Lightman

Bristol Medical School, University of Bristol

Co-authored papers 1

Marylyn D Ritchie

Center for Systems Genomics, Pennsylvania State University, University Park

Co-authored papers 1

Solveig K Sieberts

University of Washington

Co-authored papers 1

Fredrick R Schumacher

Case Comprehensive Cancer Center, Case Western Reserve University School of Medicine

Co-authored papers 1

1 - 30

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