Author details

Full Name

Charles Tapley Hoyt

Affiliation

Harvard Medical School

ORCID

Career Start Year

2014

Papers

H Index

Expertise

CM4AI Collaborator

Dexter Pratt (CM4AI)

PMID	Paper Title	Journal Title	Published Year
36916735	Prediction and curation of missing biomedical identifier mappings with Biomappings.	Bioinformatics	2023
37391855	Improving reproducibility and reusability in the Journal of Cheminformatics.	J Cheminform	2023
37337100	Democratizing knowledge representation with BioCypher.	Nat Biotechnol	2023
34735335	Bringing Light Into the Dark: A Large-Scale Evaluation of Knowledge Graph Embedding Models Under a Unified Framework.	IEEE Trans Pattern Anal Mach Intell	2022
35616100	A Simple Standard for Sharing Ontological Mappings (SSSOM).	Database (Oxford)	2022
35737447	Integrating multi-omics data reveals function and therapeutic potential of deubiquitinating enzymes.	Elife	2022
35758817	Do-calculus enables estimation of causal effects in partially observed biomolecular pathways.	Bioinformatics	2022
36402838	Unifying the identification of biomedical entities with the Bioregistry.	Sci Data	2022
36699362	Gilda: biomedical entity text normalization with machine-learned disambiguation as a service.	Bioinform Adv	2022
36071952	PyBioPAX: biological pathway exchange in Python.	J Open Source Softw	2022
36208225	Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies.	Database (Oxford)	2022
34986221	STonKGs: a sophisticated transformer trained on biomedical text and knowledge graphs.	Bioinformatics	2022
32637990	The Minimum Information about a Molecular Interaction CAusal STatement (MI2CAST).	Bioinformatics	2021
37981991	Leveraging Structured Biological Knowledge for Counterfactual Inference: A Case Study of Viral Pathogenesis.	IEEE Trans Big Data	2021
33554913	A Systems Biology Approach for Hypothesizing the Effect of Genetic Variants on Neuroimaging Features in Alzheimer's Disease.	J Alzheimers Dis	2021
33964127	CLEP: a hybrid data- and knowledge-driven framework for generating patient representations.	Bioinformatics	2021
32411185	Corrigendum: The Impact of Pathway Database Choice on Statistical Enrichment Analysis and Predictive Modeling.	Front Genet	2020
31993440	Challenges of Integrative Disease Modeling in Alzheimer's Disease.	Front Mol Biosci	2020
32503412	PS4DR: a multimodal workflow for identification and prioritization of drugs based on pathway signatures.	BMC Bioinformatics	2020
32211383	A Computational Approach for Mapping Heme Biology in the Context of Hemolytic Disorders.	Front Bioeng Biotechnol	2020
30768158	BioKEEN: a library for learning and evaluating biological knowledge graph embeddings.	Bioinformatics	2019
31824580	The Impact of Pathway Database Choice on Statistical Enrichment Analysis and Predictive Modeling.	Front Genet	2019
31604427	Quantifying mechanisms in neurodegenerative diseases (NDDs) using candidate mechanism perturbation amplitude (CMPA) algorithm.	BMC Bioinformatics	2019
31225582	Re-curation and rational enrichment of knowledge graphs in Biological Expression Language.	Database (Oxford)	2019
31092193	PathMe: merging and exploring mechanistic pathway knowledge.	BMC Bioinformatics	2019
29048466	PyBEL: a computational framework for Biological Expression Language.	Bioinformatics	2018
29873705	A systematic approach for identifying shared mechanisms in epilepsy and its comorbidities.	Database (Oxford)	2018
29949955	BEL2ABM: agent-based simulation of static models in Biological Expression Language.	Bioinformatics	2018
30576488	BEL Commons: an environment for exploration and analysis of networks encoded in Biological Expression Language.	Database (Oxford)	2018
30564458	ComPath: an ecosystem for exploring, analyzing, and curating mappings across pathway databases.	NPJ Syst Biol Appl	2018
25127163	Repurposing human PDE4 inhibitors for neglected tropical diseases: design, synthesis and evaluation of cilomilast analogues as Trypanosoma brucei PDEB1 inhibitors.	Bioorg Med Chem Lett	2014

1 - 31 of 31

Daniel J B Clarke

Icahn School of Medicine at Mount Sinai

Career Start Year 2018

Number of shared co-authors 1

Minji Jeon

Korea University College of Medicine

Career Start Year 2014

Number of shared co-authors 1

Zongliang Yue

University of Alabama at Birmingham, USA Informatics Institute

Career Start Year 2014

Number of shared co-authors 0

Marinka Zitnik

Harvard Medical School

Career Start Year 2013

Number of shared co-authors 0

Miguel Vazquez

Norwegian University of Science and Technology

Career Start Year 2008

Number of shared co-authors 14

Keiichiro Ono

university of california san diego

Career Start Year 2007

Number of shared co-authors 8

Robert Hoehndorf

King Abdullah University of Science and Technology

Career Start Year 2006

Number of shared co-authors 7

Augustin Luna

Harvard Medical School

Career Start Year 2006

Number of shared co-authors 11

Hai Fang

University of Bristol

Career Start Year 2006

Number of shared co-authors 3

Jan Baumbach

University of Hamburg

Career Start Year 2006

Number of shared co-authors 2

Avi Ma'ayan

Icahn School of Medicine at Mount Sinai

Career Start Year 2005

Number of shared co-authors 2

Wenjin Jim Zheng

University of Texas Health Science Center at Houston

Career Start Year 2004

Number of shared co-authors 4

Jake Y. Chen (CM4AI)

University of Alabama at Birmingham

Career Start Year 2003

Number of shared co-authors 0

Dietrich Rebholz-Schuhmann

University of Cologne

Career Start Year 2003

Number of shared co-authors 4

Benjamin M Good

Lawrence Berkeley National Laboratory

Career Start Year 2003

Number of shared co-authors 17

Emek Demir

Knight Cancer Institute, Oregon Health & Science University

Career Start Year 2002

Number of shared co-authors 11

Andrew I Su

The Scripps Research Institute

Career Start Year 2001

Number of shared co-authors 10

Kristina Hanspers

Gladstone Institutes

Career Start Year 2001

Number of shared co-authors 16

Laura I Furlong

Hospital del Mar Research Institute (IMIM), Pompeu Fabra University (UPF)

Career Start Year 2000

Number of shared co-authors 5

Gary D Bader

University of Toronto

Career Start Year 2000

Number of shared co-authors 14

Georgios V Gkoutos

Institute of Cancer and Genomic Sciences, University of Birmingham

Career Start Year 2000

Number of shared co-authors 10

Lars Juhl Jensen

Novo Nordisk Foundation Center for Protein Research, University of Copenhagen

Career Start Year 1998

Number of shared co-authors 6

Cecilia N Arighi

University of Delaware

Career Start Year 1998

Number of shared co-authors 16

Michel Dumontier

Institute of Data Science, Maastricht University

Career Start Year 1998

Number of shared co-authors 26

Alexander R Pico

Institute of Data Science and Biotechnology, Gladstone Institutes

Career Start Year 1998

Number of shared co-authors 13

Andra Waagmeester

Maastricht University

Career Start Year 1998

Number of shared co-authors 11

Fabien Campagne

Weill Cornell Medical College

Career Start Year 1998

Number of shared co-authors 0

Ioannis Xenarios

University of Lausanne

Career Start Year 1994

Number of shared co-authors 17

Lawrence E Hunter

University of Colorado School of Medicine

Career Start Year 1993

Number of shared co-authors 4

Yves A Lussier

Center for Biomedical Informatics and Biostatistics, University of Arizona

Career Start Year 1971

Number of shared co-authors 0

row(s) 1 - 30 of 30

Martin Hofmann-Apitius

Co-authored papers 15

Daniel Domingo-Fern??ndez

Fraunhofer Institute for Algorithms and Scientific Computing (SCAI)

Co-authored papers 15

Benjamin M Gyori

Khoury College of Computer Sciences, Northeastern University

Co-authored papers 9

Christopher J Mungall

International Society for Biocuration, Lawrence Berkeley National Laboratory, University of Edinburgh, University of Edinburgh School of Biological Sciences

Co-authored papers 4

Julie A McMurry

University of Colorado - Anschutz Medical Campus

Co-authored papers 3

Melissa A Haendel

Co-authored papers 3

Alpha Tom Kodamullil

Co-authored papers 3

Melissa A Haendel

American Medical Informatics Association, Oregon Health and Science University, Oregon State University, University of Colorado Anschutz Medical Campus, University of North Carolina at Chapel Hill, University of Wisconsin-Madison

Co-authored papers 3

Tiffany J Callahan

Columbia University

Co-authored papers 2

William D Duncan

University of Florida

Co-authored papers 2

Holger Fr??hlich

Bonn-Aachen International Center for IT (B-IT), University of Bonn

Co-authored papers 2

Olga Vitek

Khoury College of Computer Sciences, Northeastern University