Author details

Full Name

Chuming Chen

Affiliation

ORCID

Career Start Year

2005

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37818330	KSFinder-a knowledge graph model for link prediction of novel phosphorylated substrates of kinases.		2023
33282444	Development and Validation of a Prognostic Risk Score System for COVID-19 Inpatients: A Multi-Center Retrospective Study in China.	Engineering	2022
35975455	A knowledge graph representation learning approach to predict novel kinase-substrate interactions.	Mol Omics	2022
35696082	iPTMnet RESTful API for Post-translational Modification Network Analysis.	Methods Mol Biol	2022
34825857	NLRX1 can counteract innate immune response induced by an external stimulus favoring HBV infection by competitive inhibition of MAVS-RLRs signaling in HepG2-NTCP cells.	Science Progress	2021
33821964	UniRule: a unified rule resource for automatic annotation in the UniProt Knowledgebase.	Bioinformatics	2021
34613368	COVID-19 Knowledge Graph from semantic integration of biomedical literature and databases.	Bioinformatics	2021
32603024	Understanding ER+ Breast Cancer Dormancy Using Bioinspired Synthetic Matrices for Long-Term 3D Culture and Insights into Late Recurrence.	Adv Biosyst	2020
32354369	The novel coronavirus (COVID-19) pneumonia with negative detection of viral ribonucleic acid from nasopharyngeal swabs: a case report.	BMC Infectious Diseases	2020
32395768	RESTful API for iPTMnet: a resource for protein post-translational modification network discovery.	Database (Oxford)	2020
33554186	Predicting Illness Severity and Short-Term Outcomes of COVID-19: A Retrospective Cohort Study in China.	The Innovation	2020
33046717	Protein ontology on the semantic web for knowledge discovery.	Sci Data	2020
31499209	Delayed peak of human infections and ongoing reassortment of H7N9 avian influenza virus in the newly affected western Chinese provinces during Wave Five.	International Journal of Infectious Diseases	2019
30805646	PIRSitePredict for protein functional site prediction using position-specific rules.	Database (Oxford)	2019
30998802	Genome sequencing and transcript analysis of Hemileia vastatrix reveal expression dynamics of candidate effectors dependent on host compatibility.	PLoS ONE	2019
29695735	Integrative annotation and knowledge discovery of kinase post-translational modifications and cancer-associated mutations through federated protein ontologies and resources.	Sci Rep	2018
28925298	New natural barrigenol-like triterpenoid isolated from the husks of Xanthoceras sorbifolia Bunge.	Natural Product Research	2018
30241500	Transcriptional profiling of liver during the critical embryo-to-hatchling transition period in the chicken (Gallus gallus).	BMC Genomics	2018
28150231	Protein Bioinformatics Databases and Resources.	Methods Mol Biol	2017
28958921	IFNA2 p.Ala120Thr impairs the inhibitory activity of Interferon-Î±2 against the hepatitis B virus through altering its binding to the receptor.	Antiviral Research	2017
28835676	Homozygous p.Ser267Phe in SLC10A1 is associated with a new type of hypercholanemia and implications for personalized medicine.	Sci Rep	2017
27899649	Protein Ontology (PRO): enhancing and scaling up the representation of protein entities.	Nucleic Acids Res	2017
27838500	Novel anti-tumour barringenol-like triterpenoids from the husks of Xanthoceras sorbifolia Bunge and their three dimensional quantitative structure activity relationships analysis.	Fitoterapia	2017
27153712	Computational clustering for viral reference proteomes.	Bioinformatics	2016
26445145	RNA-Seq Analysis of Abdominal Fat in Genetically Fat and Lean Chickens Highlights a Divergence in Expression of Genes Controlling Adiposity, Hemostasis, and Lipid Metabolism.	PLoS One	2015
25649353	An integrated approach for analyzing clinical genomic variant data from next-generation sequencing.	J Biomol Tech	2015
24955109	Software for pre-processing Illumina next-generation sequencing short read sequences.	Source Code Biol Med	2014
25309735	SkateBase, an elasmobranch genome project and collection of molecular resources for chondrichthyan fishes.	F1000Res	2014
23943793	Elevated FGF21 secretion, PGC-1Î± and ketogenic enzyme expression are hallmarks of iron-sulfur cluster depletion in human skeletal muscle.	Hum Mol Genet	2014
23958731	A fast Peptide Match service for UniProt Knowledgebase.	Bioinformatics	2013
22434832	Community annotation and bioinformatics workforce development in concert--Little Skate Genome Annotation Workshops and Jamborees.	Database (Oxford)	2012
21556138	Representative proteomes: a stable, scalable and unbiased proteome set for sequence analysis and functional annotation.	PLoS One	2011
21082424	Protein bioinformatics databases and resources.	Methods Mol Biol	2011
20369061	Protein Bioinformatics Infrastructure for the Integration and Analysis of Multiple High-Throughput "omics" Data.	Adv Bioinformatics	2010
17254725	Development of a poloxamer analogs/carbopol-based in situ gelling and mucoadhesive ophthalmic delivery system for puerarin.	International Journal of Pharmaceutics	2007
16964209	Data integration gets 'Sloppy'.	Nat Biotechnol	2006
15647304	AGML Central: web based gel proteomic infrastructure.	Bioinformatics	2005
15760464	Marine genomics: a clearing-house for genomic and transcriptomic data of marine organisms.	BMC Genomics	2005