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Author Details

Mariko Okada-Hatakeyama
Institute for Protein Research, Osaka University
1999
86
29
PMIDPaper TitleJournal TitlePublished Year
37448957LncRNA <i>ZNNT1</i> induces p53 degradation by interfering with the interaction between p53 and the SART3-USP15 complex.PNAS Nexus2023
35648786Enhanced transcriptional heterogeneity mediated by NF-κB super-enhancers.PLoS Genet2022
34867936Essential Role of STAT3 Signaling in Hair Follicle Homeostasis.Front Immunol2021
32492432The Number of Transcription Factors at an Enhancer Determines Switch-like Gene Expression.Cell Rep2020
33384716Inference of Genetic Networks From Time-Series and Static Gene Expression Data: Combining a Random-Forest-Based Inference Method With Feature Selection Methods.Front Genet2020
30383247Hunt for the tipping point during endocrine resistance process in breast cancer by dynamic network biomarkers.J Mol Cell Biol2019
31329944Translation-dependent unwinding of stem-loops by UPF1 licenses Regnase-1 to degrade inflammatory mRNAs.Nucleic Acids Res2019
31291807Inference of genetic networks using random forests: Assigning different weights for gene expression data.J Bioinform Comput Biol2019
30926667Hepatic posttranscriptional network comprised of CCR4-NOT deadenylase and FGF21 maintains systemic metabolic homeostasis.Proc Natl Acad Sci U S A2019
30733279Postnatal liver functional maturation requires Cnot complex-mediated decay of mRNAs encoding cell cycle and immature liver genes.Development2019
30538116Tamoxifen mechanically reprograms the tumor microenvironment via HIF-1A and reduces cancer cell survival.EMBO Rep2019
29233889Transcriptionally inducible Pleckstrin homology-like domain, family A, member 1, attenuates ErbB receptor activity by inhibiting receptor oligomerization.J Biol Chem2018
29959681High-Quality Overlapping Paired-End Reads for the Detection of A-to-I Editing on Small RNA.Methods Mol Biol2018
29950133Base-pairing probability in the microRNA stem region affects the binding and editing specificity of human A-to-I editing enzymes ADAR1-p110 and ADAR2.RNA Biol2018
27931974Mathematical modeling of atopic dermatitis reveals "double-switch" mechanisms underlying 4 common disease phenotypes.J Allergy Clin Immunol2017
28961713Genome-scale regression analysis reveals a linear relationship for promoters and enhancers after combinatorial drug treatment.Bioinformatics2017
28542548Robustness analysis of the detailed kinetic model of an ErbB signaling network by using dynamic sensitivity.PLoS One2017
28829439An integrated expression atlas of miRNAs and their promoters in human and mouse.Nat Biotechnol2017
28850106FANTOM5 CAGE profiles of human and mouse samples.Sci Data2017
26768845Long noncoding RNA UPAT promotes colon tumorigenesis by inhibiting degradation of UHRF1.Proc Natl Acad Sci U S A2016
28725478Oscillation dynamics underlie functional switching of NF-κB for B-cell activation.NPJ Syst Biol Appl2016
27791078<i>ASBEL</i>-TCF3 complex is required for the tumorigenicity of colorectal cancer cells.Proc Natl Acad Sci U S A2016
27798619Protective neutralizing influenza antibody response in the absence of T follicular helper cells.Nat Immunol2016
27277891Stimulus-Dependent Inhibitor of Apoptosis Protein Expression Prolongs the Duration of B Cell Signalling.Sci Rep2016
27568568MYU, a Target lncRNA for Wnt/c-Myc Signaling, Mediates Induction of CDK6 to Promote Cell Cycle Progression.Cell Rep2016
26941653Genetic Network Inference Using Hierarchical Structure.Front Physiol2016
26714588CD4 memory T cells develop and acquire functional competence by sequential cognate interactions and stepwise gene regulation.Int Immunol2016
25491268Feedforward regulation of mRNA stability by prolonged extracellular signal-regulated kinase activity.FEBS J2015
26658111Application of Gene Expression Trajectories Initiated from ErbB Receptor Activation Highlights the Dynamics of Divergent Promoter Usage.PLoS One2015
26322480The transcription factor ATF7 mediates lipopolysaccharide-induced epigenetic changes in macrophages involved in innate immunological memory.Nat Immunol2015
26981372Microarray expression analysis of genes involved in innate immune memory in peritoneal macrophages.Genom Data2015
26179713Promoter-level expression clustering identifies time development of transcriptional regulatory cascades initiated by ErbB receptors in breast cancer cells.Sci Rep2015
25885578Transcriptional dynamics reveal critical roles for non-coding RNAs in the immediate-early response.PLoS Comput Biol2015
25678556Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells.Science2015
25643809Signalling mechanisms regulating phenotypic changes in breast cancer cells.Biosci Rep2015
24670764A promoter-level mammalian expression atlas.Nature2014
25069875Genome-wide comprehensive analysis of transcriptional regulation by ArgR in Thermus thermophilus.Extremophiles2014
25063842Quantitative transcriptional control of ErbB receptor signaling undergoes graded to biphasic response for cell differentiation.J Biol Chem2014
24833394Positive feedback within a kinase signaling complex functions as a switch mechanism for NF-κB activation.Science2014
24522191Fluctuation of Rac1 activity is associated with the phenotypic and transcriptional heterogeneity of glioma cells.J Cell Sci2014
23316019Individual hematopoietic stem cells in human bone marrow of patients with aplastic anemia or myelodysplastic syndrome stably give rise to limited cell lineages.Stem Cells2013
24386175Inference of Vohradský's models of genetic networks by solving two-dimensional function optimization problems.PLoS One2013
24067440Capturing drug responses by quantitative promoter activity profiling.CPT Pharmacometrics Syst Pharmacol2013
23882073Statistical significance of combinatorial regulations.Proc Natl Acad Sci U S A2013
24021876Both mutated and unmutated memory B cells accumulate mutations in the course of the secondary response and develop a new antibody repertoire optimally adapted to the secondary stimulus.Int Immunol2013
23576992Phase responses of oscillating components in a signaling pathway.Front Physiol2013
22155075Inference of S-system models of genetic networks by solving one-dimensional function optimization problems.Math Biosci2012
23027924Distinct cellular pathways select germline-encoded and somatically mutated antibodies into immunological memory.J Exp Med2012
22891299Dynamically varying interactions between heregulin and ErbB proteins detected by single-molecule analysis in living cells.Proc Natl Acad Sci U S A2012
22871947Catching transcriptional regulation by thermostatistical modeling.Phys Biol2012
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Collaborators

Noriko Yumoto
RIKEN Center for Integrative Medical Sciences
Co-authored papers 21
Yoshihide Hayashizaki
Center for Integrative Medical Sciences
Co-authored papers 11
Hideya Kawaji
RIKEN Center for Integrative Medical Sciences
Co-authored papers 9
Erik Arner
RIKEN Center for Integrative Medical Sciences (IMS)
Co-authored papers 9
Carsten O Daub
International Institute of Molecular and Cell Biology in Warsaw
Co-authored papers 8
Harukazu Suzuki
RIKEN Center for Integrative Medical Sciences
Co-authored papers 8
Timo Lassmann
Telethon Kids Institute, University of Western Australia
Co-authored papers 8
Piero Carninci
RIKEN Center for Integrative Medical Sciences
Co-authored papers 8
Alistair R R Forrest
RIKEN Center for Integrative Medical Sciences
Co-authored papers 8
Shigeyuki Yokoyama
Shinshu University School of Medicine
Co-authored papers 6
Masayoshi Itoh
RIKEN Center for Integrative Medical Sciences
Co-authored papers 6
Akira Hasegawa
RIKEN Center for Integrative Medical Sciences
Co-authored papers 5
Shinji Kondo
Co-authored papers 5
Jessica Severin
Center for Integrative Medical Sciences
Co-authored papers 5
Christine A Wells
The University of Melbourne
Co-authored papers 5
Dave S B Hoon
Saint John's Cancer Institute at Saint John's Health Center
Co-authored papers 5
Takeya Kasukawa
RIKEN Center for Integrative Medical Sciences
Co-authored papers 5
Marina Lizio
Cerevance Ltd
Co-authored papers 5
Haruhiko Koseki
RIKEN Research Center for Allergy and Immunology
Co-authored papers 4
Yuri Ishizu
RIKEN Center for Life Science Technologies
Co-authored papers 4
Jayson Harshbarger
RIKEN Center for Integrative Medical Sciences
Co-authored papers 4
Tsugumi Kawashima
RIKEN Center for Integrative Medical Sciences
Co-authored papers 4
Misako Yoneda
Institute of Industrial Science, The University of Tokyo
Co-authored papers 4
Svend Peter Klinken
Harry Perkins Institute of Medical Research
Co-authored papers 4
Yasushi Okazaki
Intractable Disease Research Center, Graduate School of Medicine, Juntendo University
Co-authored papers 4
Miki Kojima
Center for Infectious Disease and Vaccine Research, La Jolla Institute for Immunology
Co-authored papers 4
Andreas Lennartsson
Karolinska Institute
Co-authored papers 4
Dan Goldowitz
University of British Columbia
Co-authored papers 4
Michael Detmar
Institute of Pharmaceutical Sciences, ETH Zurich
Co-authored papers 4
Peter Zhang
Child and Family Research Institute, University of British Columbia
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Release 1.2