Author details

Full Name

Shuye Pu

Affiliation

College Street, University of Toronto

ORCID

Career Start Year

1996

Papers

H Index

Expertise

CM4AI Collaborator

Nevan J Krogan (CM4AI)

PMID	Paper Title	Journal Title	Published Year
36597481	Survival-based CRISPR genetic screens across a panel of permissive cell lines identify common and cell-specific SARS-CoV-2 host factors.	Heliyon	2023
37024975	Multilevel interrogation of H3.3 reveals a primordial role in transcription regulation.	Epigenetics Chromatin	2023
37100168	Omicron Spike Protein is Vulnerable to Reduction.	J Mol Biol	2023
34901782	SARS-CoV-2 nucleocapsid protein binds host mRNAs and attenuates stress granules to impair host stress response.	iScience	2022
35914531	Regulation of alternative polyadenylation by the C2H2-zinc-finger protein Sp1.	Mol Cell	2022
34086947	Functional characterization of RebL1 highlights the evolutionary conservation of oncogenic activities of the RBBP4/7 orthologue in Tetrahymena thermophila.	Nucleic Acids Res	2021
31280994	The Med31 Conserved Component of the Divergent Mediator Complex in Tetrahymena thermophila Participates in Developmental Regulation.	Curr Biol	2019
28374280	Does personal genome testing drive service utilization in an adult preventive medicine clinic?	J Community Genet	2017
25491637	Capturing the clinical utility of genomic testing: medical recommendations following pediatric microarray.	Eur J Hum Genet	2015
26121405	Assessment of a method to characterize antibody selectivity and specificity for use in immunoprecipitation.	Nat Methods	2015
25782749	Extracting high confidence protein interactions from affinity purification data: at the crossroads.	J Proteomics	2015
24009002	Risk estimates for complex disorders: comparing personal genome testing and family history.	Genet Med	2014
24981860	Human-chromatin-related protein interactions identify a demethylase complex required for chromosome segregation.	Cell Rep	2014
24007795	Protein-protein interaction networks: the puzzling riches.	Curr Opin Struct Biol	2013
22585446	Brain abnormalities in patients with Beckwith-Wiedemann syndrome.	Am J Med Genet A	2012
22940862	Interaction landscape of membrane-protein complexes in Saccharomyces cerevisiae.	Nature	2012
20876685	DAnCER: disease-annotated chromatin epigenetics resource.	Nucleic Acids Res	2011
21863499	High-throughput analyses and curation of protein interactions in yeast.	Methods Mol Biol	2011
21343703	Assessment of methylation level prediction accuracy in methyl-DNA immunoprecipitation and sodium bisulfite based microarray platforms.	Epigenetics	2011
21257609	OrthoNets: simultaneous visual analysis of orthologs and their interaction neighborhoods across different organisms.	Bioinformatics	2011
20455264	The evolutionary landscape of the chromatin modification machinery reveals lineage specific gains, expansions, and losses.	Proteins	2010
21124763	Expanding the landscape of chromatin modification (CM)-related functional domains and genes in human.	PLoS One	2010
18799807	Challenges and rewards of interaction proteomics.	Mol Cell Proteomics	2009
19095691	Up-to-date catalogues of yeast protein complexes.	Nucleic Acids Res	2009
18718945	Local coherence in genetic interaction patterns reveals prevalent functional versatility.	Bioinformatics	2008
17370254	Identifying functional modules in the physical interactome of Saccharomyces cerevisiae.	Proteomics	2007
16554755	Global landscape of protein complexes in the yeast Saccharomyces cerevisiae.	Nature	2006
16921162	GenePro: a Cytoscape plug-in for advanced visualization and analysis of interaction networks.	Bioinformatics	2006
11287104	A GABA-neuropeptide Y (NPY) interplay in LH release.	Peptides	2001
11024572	Regulation of leptin secretion: effects of aging on daily patterns of serum leptin and food consumption.	Regul Pept	2000
10958999	Melanocortin signaling is decreased during neurotoxin-induced transient hyperphagia and increased body-weight gain.	Peptides	2000
10852228	Central infusion of interleukin-1 receptor antagonist fails to alter feeding and weight gain.	Neuroreport	2000
10971807	Neuropeptide Y counteracts the anorectic and weight reducing effects of ciliary neurotropic factor.	J Neuroendocrinol	2000
10537146	Evidence that stimulation of two modalities of pituitary luteinizing hormone release in ovarian steroid-primed ovariectomized rats may involve neuropeptide Y Y1 and Y4 receptors.	Endocrinology	1999
9889330	Disruption of neural signaling within the hypothalamic ventromedial nucleus upregulates galanin gene expression in association with hyperphagia: an in situ hybridization analysis.	Brain Res Mol Brain Res	1999
9927326	Interactions between neuropeptide Y and gamma-aminobutyric acid in stimulation of feeding: a morphological and pharmacological analysis.	Endocrinology	1999
10047974	Interacting appetite-regulating pathways in the hypothalamic regulation of body weight.	Endocr Rev	1999
9767178	Diurnal rhythm in cyclic GMP/nitric oxide efflux in the medial preoptic area of male rats.	Brain Res	1998
9879756	Orexins, a novel family of hypothalamic neuropeptides, modulate pituitary luteinizing hormone secretion in an ovarian steroid-dependent manner.	Regul Pept	1998
9928192	Hypothalamic galanin is upregulated during hyperphagia.	Ann N Y Acad Sci	1998
9748101	Neural substrates for leptin and neuropeptide Y (NPY) interaction: hypothalamic sites associated with inhibition of NPY-induced food intake.	Physiol Behav	1998
9725714	Ovarian steroid-independent diurnal rhythm in cyclic GMP/nitric oxide efflux in the medial preoptic area: possible role in preovulatory and ovarian steroid-induced LH surge.	J Neuroendocrinol	1998
9075713	Evidence showing that beta-endorphin regulates cyclic guanosine 3',5'-monophosphate (cGMP) efflux: anatomical and functional support for an interaction between opiates and nitric oxide.	Endocrinology	1997
9283045	The interactive language of the hypothalamus for the gonadotropin releasing hormone (GNRH) system.	J Neuroendocrinol	1997
8612535	Evidence that gonadal steroids modulate nitric oxide efflux in the medial preoptic area: effects of N-methyl-D-aspartate and correlation with luteinizing hormone secretion.	Endocrinology	1996
8940349	An interactive physiological role of neuropeptide Y and galanin in pulsatile pituitary luteinizing hormone secretion.	Endocrinology	1996

1 - 46 of 46

Hollis Wright

Oregon National Primate Research Center/OHSU

Career Start Year 2007

Number of shared co-authors 0

Anna Dvorkin-Gheva

McMaster University

Career Start Year 2006

Number of shared co-authors 2

Nino Devidze

Gladstone Institute of Neurological Disease

Career Start Year 2003

Number of shared co-authors 1

Sven Bergmann

University of Lausanne

Career Start Year 2002

Number of shared co-authors 0

Stephanie M Krasnow

Pape Family Pediatric Research Institute, Oregon Health & Science University

Career Start Year 2001

Number of shared co-authors 0

Jonathan C Trinidad

Indiana University

Career Start Year 2000

Number of shared co-authors 2

Reka Toth

German Cancer Research Center (DKFZ)

Career Start Year 1997

Number of shared co-authors 0

Sandra L Rodriguez-Zas

University of Illinois at Urbana-Champaign

Career Start Year 1997

Number of shared co-authors 0

Haiping Hao

Johns Hopkins School of Medicine

Career Start Year 1997

Number of shared co-authors 0

Thomas Lemberger

German Cancer Research Center

Career Start Year 1994

Number of shared co-authors 0

Kevin G Becker

National Institute on Aging, National Institutes of Health

Career Start Year 1992

Number of shared co-authors 0

Lawrence E Heisler

Ontario Institute for Cancer Research

Career Start Year 1992

Number of shared co-authors 4

Tom C Freeman

The Roslin Institute, University of Edinburgh

Career Start Year 1990

Number of shared co-authors 1

Rexford S Ahima

Johns Hopkins University

Career Start Year 1990

Number of shared co-authors 0

Daniel L Marks

Pape Family Pediatric Research Institute, Oregon Health & Science University

Career Start Year 1990

Number of shared co-authors 0

Kevin L Grove

Novo Nordisk Research Center Seattle

Career Start Year 1989

Number of shared co-authors 0

Roger A Kroes

Falk Center for Molecular Therapeutics, Northwestern University

Career Start Year 1989

Number of shared co-authors 0

Stuart C Sealfon

Icahn School of Medicine at Mount Sinai

Career Start Year 1988

Number of shared co-authors 1

Sally Radovick

Rutgers-Robert Wood Johnson Medical School

Career Start Year 1988

Number of shared co-authors 0

Denise D Belsham

University of Toronto, 1 Kings College Circle

Career Start Year 1988

Number of shared co-authors 1

Herbert Herzog

Garvan Institute of Medical Research

Career Start Year 1987

Number of shared co-authors 0

Charles Claudianos

Queensland Brain Institute, The University of Queensland

Career Start Year 1986

Number of shared co-authors 0

Jonathan Pevsner

Kennedy Krieger Institute, Johns Hopkins University School of Medicine

Career Start Year 1984

Number of shared co-authors 0

Balint Z Kacsoh

Epigenetics Institute, University of Pennsylvania

Career Start Year 1982

Number of shared co-authors 1

Martin Schalling

Karolinska Institutet.

Career Start Year 1982

Number of shared co-authors 0

Peter J Munson

and Blood Institute, National Institutes of Health

Career Start Year 1978

Number of shared co-authors 0

Jaime Prilusky

Weizmann Institute of Science

Career Start Year 1975

Number of shared co-authors 4

Richard H Goodman

Vollum Institute, Oregon Health & Science University

Career Start Year 1973

Number of shared co-authors 0

Wolfgang Sad??e

College of Medicine, The Ohio State University

Career Start Year 1967

Number of shared co-authors 0

John R Yates

TheScripps Research Institute

Career Start Year 1960

Number of shared co-authors 6

row(s) 1 - 30 of 30

Shoshana J Wodak

VIB-VUB Center for Structural Biology

Co-authored papers 19

Jack F Greenblatt

College Street, University of Toronto

Co-authored papers 17

James Vlasblom

University of Regina

Co-authored papers 11

Andrew Emili

Boston University School of Medicine, Boston University

Co-authored papers 9

Zhaolei Zhang

University of Toronto

Co-authored papers 6

Guoqing Zhong

University of Toronto

Co-authored papers 6

Xinghua Guo

University of Toronto, College Street

Co-authored papers 5

John Parkinson

The Hospital for Sick Children

Co-authored papers 4

Sadhna Phanse

University of Regina

Co-authored papers 4

Joyce Li

University of Toronto, College Street

Co-authored papers 3

Jeffrey Fillingham

Toronto Metropolitan University

Co-authored papers 3

Benjamin J Blencowe

University of Toronto

Co-authored papers 3

Yunchen Gong

University of Toronto

Co-authored papers 2

Susanne Gr??slund

Karolinska Institutet

Co-authored papers 2

Chris Orsi

Hospital for Sick Children, University Avenue

Co-authored papers 2

Zuyao Ni

University of Toronto, College Street

Co-authored papers 2

Shamanta Chandran

Co-authored papers 2

Michael Davey

BC Children's Hospital Research Institute, University of British Columbia

Co-authored papers 2

Hongbo Guo

Beihang University

Co-authored papers 2

Igor Stagljar

University of Toronto, Canada Mediterranean Institute for Life Sciences

Co-authored papers 2

Samuel Wu

Co-authored papers 2

Timothy R Hughes

University of Toronto

Co-authored papers 2

Thanuja Punna

Co-authored papers 2

Aaron P Tikuisis

Co-authored papers 1

Kevin R Brown

College Street, University of Toronto

Co-authored papers 1

Jessica Wong

Center for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia

Co-authored papers 1

Andrei Starostine

University of Toronto

Co-authored papers 1

Jennifer J Rilstone

Institute of Medical Science, University of Toronto

Co-authored papers 1

Gabe Musso

Co-authored papers 1

Debashish Ray

Co-authored papers 1

1 - 30

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