|
| 37500913 | Greengenes2 unifies microbial data in a single reference tree. | Nat Biotechnol | 2024 |
| 37853258 | Author Correction: Greengenes2 unifies microbial data in a single reference tree. | Nat Biotechnol | 2024 |
| 36828255 | Diet Quality and the Fecal Microbiota in Adults in the American Gut Project. | J Nutr | 2023 |
| 37350611 | Maximizing the potential of high-throughput next-generation sequencing through precise normalization based on read count distribution. | mSystems | 2023 |
| 37365313 | Multi-level analysis of the gut-brain axis shows autism spectrum disorder-associated molecular and microbial profiles. | Nat Neurosci | 2023 |
| 36697822 | Insulin-regulated serine and lipid metabolism drive peripheral neuropathy. | Nature | 2023 |
| 33978602 | Impact of Vaginal Estrogen on the Urobiome in Postmenopausal Women With Recurrent Urinary Tract Infection. | Female Pelvic Med Reconstr Surg | 2022 |
| 35369727 | Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy. | mSystems | 2022 |
| 35638356 | Optimizing UniFrac with OpenACC Yields Greater Than One Thousand Times Speed Increase. | mSystems | 2022 |
| 35685770 | A Prebiotic Diet Alters the Fecal Microbiome and Improves Sleep in Response to Sleep Disruption in Rats. | Front Neurosci | 2022 |
| 36396943 | Host biology, ecology and the environment influence microbial biomass and diversity in 101 marine fish species. | Nat Commun | 2022 |
| 36503356 | Stool multi-omics for the study of host-microbe interactions in inflammatory bowel disease. | Gut Microbes | 2022 |
| 36073806 | Zebra: Static and Dynamic Genome Cover Thresholds with Overlapping References. | mSystems | 2022 |
| 36179670 | Pan-cancer analyses reveal cancer-type-specific fungal ecologies and bacteriome interactions. | Cell | 2022 |
| 36304280 | Applications and Comparison of Dimensionality Reduction Methods for Microbiome Data. | Front Bioinform | 2022 |
| 35076975 | Predicting fungal infection rate and severity with skin-associated microbial communities on amphibians. | Mol Ecol | 2022 |
| 33469429 | Effects of Immunization With the Soil-Derived Bacterium <i>Mycobacterium vaccae</i> on Stress Coping Behaviors and Cognitive Performance in a "Two Hit" Stressor Model. | Front Physiol | 2021 |
| 33727399 | EMPress Enables Tree-Guided, Interactive, and Exploratory Analyses of Multi-omic Data Sets. | mSystems | 2021 |
| 34805616 | Sleep and Circadian Disruption and the Gut Microbiome-Possible Links to Dysregulated Metabolism. | Curr Opin Endocr Metab Res | 2021 |
| 34479875 | Efficient computation of Faith's phylogenetic diversity with applications in characterizing microbiomes. | Genome Res | 2021 |
| 34242738 | Ruminiclostridium 5, Parabacteroides distasonis, and bile acid profile are modulated by prebiotic diet and associate with facilitated sleep/clock realignment after chronic disruption of rhythms. | Brain Behav Immun | 2021 |
| 33199911 | Chemically informed analyses of metabolomics mass spectrometry data with Qemistree. | Nat Chem Biol | 2021 |
| 32343490 | QIIME 2 Enables Comprehensive End-to-End Analysis of Diverse Microbiome Data and Comparative Studies with Publicly Available Data. | Curr Protoc Bioinformatics | 2020 |
| 31930986 | Microbial Diversity in Clinical Microbiome Studies: Sample Size and Statistical Power Considerations. | Gastroenterology | 2020 |
| 32078624 | Repeated sleep disruption in mice leads to persistent shifts in the fecal microbiome and metabolome. | PLoS One | 2020 |
| 31850642 | Microbial biogeography and ecology of the mouth and implications for periodontal diseases. | Periodontol 2000 | 2020 |
| 32576651 | High-Resolution Longitudinal Dynamics of the Cystic Fibrosis Sputum Microbiome and Metabolome through Antibiotic Therapy. | mSystems | 2020 |
| 32994327 | A Distinct Microbiome Signature in Posttreatment Lyme Disease Patients. | mBio | 2020 |
| 32581888 | Paroxetine Administration Affects Microbiota and Bile Acid Levels in Mice. | Front Psychiatry | 2020 |
| 32391521 | Visualizing 'omic feature rankings and log-ratios using Qurro. | NAR Genom Bioinform | 2020 |
| 32184368 | Multiple-Disease Detection and Classification across Cohorts via Microbiome Search. | mSystems | 2020 |
| 31058230 | Intermittent Hypoxia and Hypercapnia Reproducibly Change the Gut Microbiome and Metabolome across Rodent Model Systems. | mSystems | 2019 |
| 31387904 | Reply to Sun et al., "Identifying Composition Novelty in Microbiome Studies: Improvement of Prediction Accuracy". | mBio | 2019 |
| 31239397 | redbiom: a Rapid Sample Discovery and Feature Characterization System. | mSystems | 2019 |
| 31399723 | Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. | Nat Biotechnol | 2019 |
| 31341288 | Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. | Nat Biotechnol | 2019 |
| 30813950 | Environmental toxicants in breast milk of Norwegian mothers and gut bacteria composition and metabolites in their infants at 1 month. | Microbiome | 2019 |
| 30714619 | Suppression of the gut microbiome ameliorates age-related arterial dysfunction and oxidative stress in mice. | J Physiol | 2019 |
| 29055911 | Guiding longitudinal sampling in IBD cohorts. | Gut | 2018 |
| 30059804 | Are microbiome studies ready for hypothesis-driven research? | Curr Opin Microbiol | 2018 |
| 30377368 | Striped UniFrac: enabling microbiome analysis at unprecedented scale. | Nat Methods | 2018 |
| 30425147 | Identifying and Predicting Novelty in Microbiome Studies. | mBio | 2018 |
| 30521034 | Erratum to: The sponge microbiome project. | Gigascience | 2018 |
| 30275573 | Qiita: rapid, web-enabled microbiome meta-analysis. | Nat Methods | 2018 |
| 29719869 | Phylogenetic Placement of Exact Amplicon Sequences Improves Associations with Clinical Information. | mSystems | 2018 |
| 29404425 | Gut Microbiota Offers Universal Biomarkers across Ethnicity in Inflammatory Bowel Disease Diagnosis and Infliximab Response Prediction. | mSystems | 2018 |
| 29795809 | American Gut: an Open Platform for Citizen Science Microbiome Research. | mSystems | 2018 |
| 29795328 | Best practices for analysing microbiomes. | Nat Rev Microbiol | 2018 |
| 28506317 | Changes in microbial ecology after fecal microbiota transplantation for recurrent C. difficile infection affected by underlying inflammatory bowel disease. | Microbiome | 2017 |
| 28253908 | Normalization and microbial differential abundance strategies depend upon data characteristics. | Microbiome | 2017 |