Author details

Full Name

Yaoyang Zhang

Affiliation

ORCID

Career Start Year

2009

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
34697451	Loss of TDP-43 function underlies hippocampal and cortical synaptic deficits in TDP-43 proteinopathies.	Molecular Psychiatry	2023
36966392	Proximity labeling reveals OTUD3 as a DNA-binding deubiquitinase of cGAS.		2023
36796266	Site-specific labeling of antibodies with quantum dots could promote to retain the antigen binding capacity of antibodies.		2023
36609502	Benchmarking commonly used software suites and analysis workflows for DIA proteomics and phosphoproteomics.	Nat Commun	2023
37545086	Quantitative Acetylomics Reveals Substrates of Lysine Acetyltransferase GCN5 in Adult and Aging .		2023
35101211	SecMS analysis of selenoproteins with selenocysteine insertion sequence and beyond.	Methods in Enzymology	2022
35398355	The mouse nicotinamide mononucleotide adenylyltransferase chaperones diverse pathological amyloid client proteins.	Journal of Biological Chemistry	2022
36048712	Specific binding of Hsp27 and phosphorylated Tau mitigates abnormal Tau aggregation-induced pathology.	Elife	2022
35961308	TMUB1 is an endoplasmic reticulum-resident escortase that promotes the p97-mediated extraction of membrane proteins for degradation.	Molecular Cell	2022
35931320	Quantitative Acetylomics Reveals Dynamics of Protein Lysine Acetylation in Mouse Livers During Aging and Upon the Treatment of Nicotinamide Mononucleotide.	Molecular and Cellular Proteomics	2022
35477998	Generic amyloid fibrillation of TMEM106B in patient with Parkinson's disease dementia and normal elders.	Cell Research	2022
35100390	microRNA-252 and FoxO repress inflammaging by a dual inhibitory mechanism on Dawdle-mediated TGF-Î² pathway in Drosophila.	Genetics	2022
34706270	Rapamycin targets STAT3 and impacts c-Myc to suppress tumor growth.	Cell Chemical Biology	2022
34478637	A photoaffinity labeling strategy identified EF1A1 as a binding protein of cyclic dinucleotide 2'3'-cGAMP.	Cell Chemical Biology	2022
34716315	The hereditary mutation G51D unlocks a distinct fibril strain transmissible to wild-type Î±-synuclein.	Nature Communications	2021
34290087	Multiregional profiling of the brain transmembrane proteome uncovers novel regulators of depression.	Sci Adv	2021
34013721	A Simple and Efficient Method to Generate Dual Site-Specific Conjugation ADCs with Cysteine Residue and an Unnatural Amino Acid.	Bioconjugate Chemistry	2021
34210972	Long noncoding RNA BS-DRL1 modulates the DNA damage response and genome stability by interacting with HMGB1 in neurons.	Nature Communications	2021
34344474	Low level laser therapy promotes bone regeneration by coupling angiogenesis and osteogenesis.	Stem Cell Research and Therapy	2021
34867191	Quantitative Proteomic Analysis of Mouse Sciatic Nerve Reveals Post-injury Upregulation of ADP-Dependent Glucokinase Promoting Macrophage Phagocytosis.	Frontiers in Molecular Neuroscience	2021
34689152	Quantitative analysis of phosphoproteome in necroptosis reveals a role of TRIM28 phosphorylation in promoting necroptosis-induced cytokine production.	Cell Death and Disease	2021
34467350	Selective Mitochondrial Protein Labeling Enabled by Biocompatible Photocatalytic Reactions inside Live Cells.		2021
34735112	Carboxypeptidase Y Assisted Disulfide-Bond Identification with Linearized Database Search.	Analytical Chemistry	2021
32645369	RNF126-Mediated Reubiquitination Is Required for Proteasomal Degradation of p97-Extracted Membrane Proteins.	Molecular Cell	2020
32203130	Cryo-EM structure of full-length Î±-synuclein amyloid fibril with Parkinson's disease familial A53T mutation.	Cell Research	2020
32250733	Nicotinamide mononucleotide adenylyltransferase uses its NAD<sup>+</sup> substrate-binding site to chaperone phosphorylated Tau.	Elife	2020
32109675	Hybrid Spectral Library Combining DIA-MS Data and a Targeted Virtual Library Substantially Deepens the Proteome Coverage.	iScience	2020
32332696	A necroptotic-independent function of MLKL in regulating endothelial cell adhesion molecule expression.	Cell Death and Disease	2020
31922419	Aspirin Reshapes Acetylomes in Inflammatory and Cancer Cells via CoA-Dependent and CoA-Independent Pathways.	Journal of Proteome Research	2020
32543193	Integrated Proteomic and N-Glycoproteomic Analyses of Human Breast Cancer.	Journal of Proteome Research	2020
30672298	Multi-omic Analyses Reveal Minimal Impact of the CRISPR-Cas9 Nuclease on Cultured Human Cells.	Journal of Proteome Research	2019
31434710	Multidimensional Proteomics Identifies Declines in Protein Homeostasis and Mitochondria as Early Signals for Normal Aging and Age-associated Disease in .	Molecular and Cellular Proteomics	2019
31113955	Ubiquitylome study identifies increased histone 2A ubiquitylation as an evolutionarily conserved aging biomarker.	Nature Communications	2019
30728452	PARylation regulates stress granule dynamics, phase separation, and neurotoxicity of disease-related RNA-binding proteins.	Cell Research	2019
29809154	Epigenetic drift of H3K27me3 in aging links glycolysis to healthy longevity in <i>Drosophila</i>.	Elife	2018
30174312	Selenocysteine-Specific Mass Spectrometry Reveals Tissue-Distinct Selenoproteomes and Candidate Selenoproteins.	Cell Chemical Biology	2018
28241004	Differential Sensitivity of Target Genes to Translational Repression by miR-17~92.	PLoS Genetics	2017
28845672	Proteome-Wide Analysis of N-Glycosylation Stoichiometry Using SWATH Technology.	Journal of Proteome Research	2017
28739856	CKS Proteins Promote Checkpoint Recovery by Stimulating Phosphorylation of Treslin.	Mol Cell Biol	2017
26718004	Antagonistic roles of Nibbler and Hen1 in modulating piRNA 3' ends in Drosophila.	Development	2016
27434013	Erratum: A TRAF-like motif of the inducible costimulator ICOS controls development of germinal center TFH cells via the kinase TBK1.	Nat Immunol	2016
27135603	A TRAF-like motif of the inducible costimulator ICOS controls development of germinal center TFH cells via the kinase TBK1.	Nat Immunol	2016
27002169	Correction: Degradation of HK2 by chaperone-mediated autophagy promotes metabolic catastrophe and cell death.	J Cell Biol	2016
26323688	Degradation of HK2 by chaperone-mediated autophagy promotes metabolic catastrophe and cell death.	J Cell Biol	2015
25801023	Activation of necroptosis in multiple sclerosis.	Cell Reports	2015
25583473	The butterfly effect in cancer: a single base mutation can remodel the cell.	Proc Natl Acad Sci U S A	2015
25560523	SWATH enables precise label-free quantification on proteome scale.	Proteomics	2015
26307763	Fmr1 deficiency promotes age-dependent alterations in the cortical synaptic proteome.	Proc Natl Acad Sci U S A	2015
26469762	The IRE1Î±/XBP1s Pathway Is Essential for the Glucose Response and Protection of Î² Cells.	PLoS Biol	2015
26196237	ProteinInferencer: Confident protein identification and multiple experiment comparison for large scale proteomics projects.	J Proteomics	2015