Author details

Full Name

Andrew S Allen

Affiliation

Duke University School of Medicine

ORCID

Career Start Year

2001

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37918895	Ultra-rare genetic variation in relapsing polychondritis: a whole-exome sequencing study.	Ann Rheum Dis	2024
37292664	Ultra-Rare Genetic Variation in Relapsing Polychondritis: A Whole-Exome Sequencing Study.	medRxiv	2023
34849577	Focused goodness of fit tests for gene set analyses.	Brief Bioinform	2022
35385101	Ancestry adjustment improves genome-wide estimates of regional intolerance.	Genetics	2022
34256850	Coding and noncoding variants in EBF3 are involved in HADDS and simplex autism.	Hum Genomics	2021
33722938	Correcting signal biases and detecting regulatory elements in STARR-seq data.	Genome Res	2021
34487148	A Bayesian hierarchical model to estimate DNA methylation conservation in colorectal tumors.	Bioinformatics	2021
34216551	Targeted long-read sequencing identifies missing disease-causing variation.	Am J Hum Genet	2021
31368479	Bayesian estimation of genetic regulatory effects in high-throughput reporter assays.	Bioinformatics	2020
32786180	Causal Genetic Variants in Stillbirth.	N Engl J Med	2020
32501597	Secondary analysis of case-control association studies: Insights on weighting-based inference motivate a new specification test.	Stat Med	2020
29535370	Genome-wide association study (GWAS) of human host factors influencing viral severity of herpes simplex virus type 2 (HSV-2).	Genes Immun	2019
31605095	Rare-variant collapsing analyses for complex traits: guidelines and applications.	Nat Rev Genet	2019
31599933	Evaluating Chromatin Accessibility Differences Across Multiple Primate Species Using a Joint Modeling Approach.	Genome Biol Evol	2019
30940688	A new approach for rare variation collapsing on functional protein domains implicates specific genic regions in ALS.	Genome Res	2019
31085678	Exome-Based Rare-Variant Analyses in CKD.	J Am Soc Nephrol	2019
31138120	Efficient estimation of grouped survival models.	BMC Bioinformatics	2019
30686509	Improved Pathogenic Variant Localization via a Hierarchical Model of Sub-regional Intolerance.	Am J Hum Genet	2019
29324863	Correction: Orion: Detecting regions of the human non-coding genome that are intolerant to variation using population genetics.	PLoS One	2018
30122786	Facilitating the Calculation of the Efficient Score Using Symbolic Computing.	Am Stat	2018
30575722	Human genome-wide measurement of drug-responsive regulatory activity.	Nat Commun	2018
30420557	Loss of tubulin deglutamylase CCP1 causes infantile-onset neurodegeneration.	EMBO J	2018
30273353	meaRtools: An R package for the analysis of neuronal networks recorded on microelectrode arrays.	PLoS Comput Biol	2018
29790906	bcSeq: an R package for fast sequence mapping in high-throughput shRNA and CRISPR screens.	Bioinformatics	2018
29738522	De novo and inherited private variants in MAP1B in periventricular nodular heterotopia.	PLoS Genet	2018
29679388	Somatic SLC35A2 variants in the brain are associated with intractable neocortical epilepsy.	Ann Neurol	2018
29032853	Genetic Polymorphisms of CFH and ARMS2 Do Not Predict Response to Antioxidants and Zinc in Patients with Age-Related Macular Degeneration: Independent Statistical Evaluations of Data from the Age-Related Eye Disease Study.	Ophthalmology	2018
27917519	Leveraging population information in family-based rare variant association analyses of quantitative traits.	Genet Epidemiol	2017
28332560	Evaluating genetic susceptibility to Staphylococcus aureus bacteremia in African Americans using admixture mapping.	Genes Immun	2017
28099038	An Exome Sequencing Study to Assess the Role of Rare Genetic Variation in Pulmonary Fibrosis.	Am J Respir Crit Care Med	2017
29186148	A case-control collapsing analysis identifies epilepsy genes implicated in trio sequencing studies focused on de novo mutations.	PLoS Genet	2017
29047346	Mapping eQTL by leveraging multiple tissues and DNA methylation.	BMC Bioinformatics	2017
28691125	Quantifying the Impact of Non-coding Variants on Transcription Factor-DNA Binding.	Res Comput Mol Biol	2017
28797091	Orion: Detecting regions of the human non-coding genome that are intolerant to variation using population genetics.	PLoS One	2017
28525990	Transversions have larger regulatory effects than transitions.	BMC Genomics	2017
28864461	Somatic uniparental disomy of Chromosome 16p in hemimegalencephaly.	Cold Spring Harb Mol Case Stud	2017
28011790	High-throughput interpretation of gene structure changes in human and nonhuman resequencing data, using ACE.	Bioinformatics	2017
26781712	The intolerance to functional genetic variation of protein domains predicts the localization of pathogenic mutations within genes.	Genome Biol	2016
26450422	Polymorphisms in HLA Class II Genes Are Associated With Susceptibility to Staphylococcus aureus Infection in a White Population.	J Infect Dis	2016
27241694	Robust analysis of secondary phenotypes in case-control genetic association studies.	Stat Med	2016
27453577	Mutations of the Sonic Hedgehog Pathway Underlie Hypothalamic Hamartoma with Gelastic Epilepsy.	Am J Hum Genet	2016
27341818	Exploiting expression patterns across multiple tissues to map expression quantitative trait loci.	BMC Bioinformatics	2016
27152526	Testing Rare-Variant Association without Calling Genotypes Allows for Systematic Differences in Sequencing between Cases and Controls.	PLoS Genet	2016
25270736	Testing for risk and protective trends in genetic analyses of HIV acquisition.	Biostatistics	2015
26332131	The Intolerance of Regulatory Sequence to Genetic Variation Predicts Gene Dosage Sensitivity.	PLoS Genet	2015
26235986	Incorporating Functional Information in Tests of Excess De Novo Mutational Load.	Am J Hum Genet	2015
25840007	The genetics of neuropsychiatric diseases: looking in and beyond the exome.	Annu Rev Neurosci	2015
25631493	Testing the effect of rare compound-heterozygous and recessive mutations in case--parent sequencing studies.	Genet Epidemiol	2015
25700176	Exome sequencing in amyotrophic lateral sclerosis identifies risk genes and pathways.	Science	2015
24524581	A genome-wide association study of variants associated with acquisition of Staphylococcus aureus bacteremia in a healthcare setting.	BMC Infect Dis	2014

1 - 50 of 99

Paul F O'Reilly

Icahn School of Medicine at Mount Sinai

Career Start Year 2008

Number of shared co-authors 3

Yun Li

University of British Columbia

Career Start Year 2007

Number of shared co-authors 8

Bogdan Pasaniuc

David Geffen School of Medicine, University of California los angeles

Career Start Year 2006

Number of shared co-authors 9

William S Bush

Cleveland Institute for Computational Biology, Case Western Reserve University

Career Start Year 2006

Number of shared co-authors 7

Benjamin F Voight

Perelman School of Medicine, University of Pennsylvania

Career Start Year 2005

Number of shared co-authors 15

Ondrej Libiger

The Qualcomm Institute, University of California

Career Start Year 2005

Number of shared co-authors 0

Zolt??n Kutalik

University of Lausanne

Career Start Year 2004

Number of shared co-authors 15

Alkes L Price

Broad Institute of MIT and Harvard

Career Start Year 2003

Number of shared co-authors 15

Marylyn D Ritchie

Center for Systems Genomics, Pennsylvania State University, University Park

Career Start Year 2001

Number of shared co-authors 19

Andrew D Skol

The University of Chicago

Career Start Year 2001

Number of shared co-authors 1

Yuki Bradford

University of Pennsylvania

Career Start Year 2001

Number of shared co-authors 5

Gon??alo R Abecasis

Regeneron Pharmaceuticals Inc.

Career Start Year 2000

Number of shared co-authors 29

Jo Knight

Data Science Institute and Lancaster University Medical School

Career Start Year 2000

Number of shared co-authors 3

Matthew Stephens

University of Chicago

Career Start Year 2000

Number of shared co-authors 3

Sebastian Z??llner

University of Michigan ann arbor

Career Start Year 1998

Number of shared co-authors 13

Shaun Purcell

Brigham and Women's Hospital

Career Start Year 1998

Number of shared co-authors 12

Jonathan Marchini

Regeneron Pharmaceuticals Inc

Career Start Year 1997

Number of shared co-authors 8

Andrew P Morris

The University of Manchester

Career Start Year 1997

Number of shared co-authors 13

Hongyu Zhao

Yale University

Career Start Year 1995

Number of shared co-authors 11

Hemant K Tiwari

University of Alabama at Birmingham

Career Start Year 1995

Number of shared co-authors 11

Jeffrey R O'Connell

University of Maryland School of Medicine

Career Start Year 1995

Number of shared co-authors 12

Christopher S Carlson

University of Washington

Career Start Year 1994

Number of shared co-authors 15

Heather J Cordell

Population Health Sciences Institute, Newcastle University

Career Start Year 1993

Number of shared co-authors 5

Heike Bickeb??ller

University Medical Center Goettingen

Career Start Year 1992

Number of shared co-authors 4

David A Hinds

23andMe Inc.

Career Start Year 1992

Number of shared co-authors 7

David Altshuler

Broad Institute of Harvard and Massachusetts Institute of Technology (MIT)

Career Start Year 1992

Number of shared co-authors 17

Lon R Cardon

BioMarin Pharmaceutical Inc.

Career Start Year 1991

Number of shared co-authors 4

Janet S Sinsheimer

David Geffen School of Medicine

Career Start Year 1991

Number of shared co-authors 2

Mark J Daly

Massachusetts General Hospital

Career Start Year 1987

Number of shared co-authors 29

Nicholas J Schork

University of California San Diego

Career Start Year 1987

Number of shared co-authors 12

row(s) 1 - 30 of 30

David B Goldstein

Institute for Genomic Medicine, Columbia University Irving Medical Center

Co-authored papers 25

Erin L Heinzen

University of North Carolina at Chapel Hill.

Co-authored papers 10

Yi-Ju Li

Duke University School of Medicine

Co-authored papers 6

Kouros Owzar

Duke University

Co-authored papers 6

Timothy E Reddy

Co-authored papers 6

Vance G Fowler

Duke University School of Medicine

Co-authored papers 4

Brett Copeland

University of California

Co-authored papers 4

William K Scott

John P. Hussman Institute for Human Genomics.

Co-authored papers 4

Ingrid E Scheffer

Co-authored papers 3

Charlotte L Nelson

Duke Clinical Research Institute

Co-authored papers 3

Elizabeth T Cirulli

Duke University

Co-authored papers 3

Elizabeth R Hauser

Duke University School of Medicine

Co-authored papers 3

Gundula Povysil

Institute for Genomic Medicine, Columbia University Medical Center

Co-authored papers 3

Kimberly Pelak

Foundation Medicine

Co-authored papers 2

Sun-Hee Ahn

The Warren Alpert Medical School of Brown University/Rhode Island Hospital

Co-authored papers 2

Peter A Merkel

University of Pennsylvania Perelman School of Medicine

Co-authored papers 2

Peter C Grayson

National Institute of Arthritis and Musculoskeletal and Skin Diseases

Co-authored papers 2

Francis J McMahon

National Institute of Mental Health, National Institutes of Health

Co-authored papers 2

William L Lowe

Feinberg School of Medicine, Northwestern University

Co-authored papers 2

Richard M Myers

HudsonAlpha Institute for Biotechnology

Co-authored papers 2

Peter B Crino

Co-authored papers 2

Lynda A Szczech

FibroGen Inc.

Co-authored papers 2

Daniel H Lowenstein

University of California san francisco

Co-authored papers 2

Gonzalo Laje

Gothenburg University.

Co-authored papers 2

Alexias Safi

Center for Genomic and Computational Biology, Duke University Medical Center

Co-authored papers 2

Gerald A Grant

Brigham and Women's Hospital, Harvard Medical School

Co-authored papers 2

Lindsay G Cowell

University of Texas Southwestern Medical Center

Co-authored papers 2

Felicia Ruffin

Duke University School of Medicine

Co-authored papers 2

Guy A Rouleau

McGill University, Canada Montreal Neurological Institute and Hospital

Co-authored papers 2

Evan E Eichler

University of Washington

Co-authored papers 2

1 - 30

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