Author details

Full Name

Xiuxia Du

Affiliation

ORCID

Career Start Year

2005

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36859716	Integrative analysis of multimodal mass spectrometry data in MZmine 3.	Nat Biotechnol	2023
36778509	The unknown lipids project: harmonized methods improve compound identification and data reproducibility in an inter-laboratory untargeted lipidomics study.	bioRxiv	2023
35736424	Memory-Efficient Searching of Gas-Chromatography Mass Spectra Accelerated by Prescreening.	Metabolites	2022
34455770	ADAP-KDB: A Spectral Knowledgebase for Tracking and Prioritizing Unknown GC-MS Spectra in the NIH's Metabolomics Data Repository.	Anal Chem	2021
33467846	A Practical Guide to Metabolomics Software Development.	Anal Chem	2021
34203215	Knockout of Putative Tumor Suppressor Aldh1l1 in Mice Reprograms Metabolism to Accelerate Growth of Tumors in a Diethylnitrosamine (DEN) Model of Liver Carcinogenesis.	Cancers	2021
33169034	Auto-deconvolution and molecular networking of gas chromatography-mass spectrometry data.	Nat Biotechnol	2021
33168096	Aldh1l2 knockout mouse metabolomics links the loss of the mitochondrial folate enzyme to deregulation of a lipid metabolism observed in rare human disorder.	Human Genomics	2020
31953811	Metabolomics Data Preprocessing Using ADAP and MZmine 2.	Methods in Molecular Biology	2020
31274283	ADAP-GC 4.0: Application of Clustering-Assisted Multivariate Curve Resolution to Spectral Deconvolution of Gas Chromatography-Mass Spectrometry Metabolomics Data.	Anal Chem	2019
31593839	Aggregate Interactome Based on Protein Cross-linking Interfaces Predicts Drug Targets to Limit Aggregation in Neurodegenerative Diseases.	iScience	2019
31624291	Cytosolic 10-formyltetrahydrofolate dehydrogenase regulates glycine metabolism in mouse liver.	Scientific Reports	2019
29694022	Correction to ADAP-GC 3.0: Improved Peak Detection and Deconvolution of Co-eluting Metabolites from GC/TOF-MS Data for Metabolomics Studies.	Analytical Chemistry	2018
29076734	ADAP-GC 3.2: Graphical Software Tool for Efficient Spectral Deconvolution of Gas Chromatography-High-Resolution Mass Spectrometry Metabolomics Data.	J Proteome Res	2018
28108628	Metabolic Reprogramming by Folate Restriction Leads to a Less Aggressive Cancer Phenotype.	Molecular Cancer Research	2017
28752757	Detailed Investigation and Comparison of the XCMS and MZmine 2 Chromatogram Construction and Chromatographic Peak Detection Methods for Preprocessing Mass Spectrometry Metabolomics Data.	Analytical Chemistry	2017
28752754	One Step Forward for Reducing False Positive and False Negative Compound Identifications from Mass Spectrometry Metabolomics Data: New Algorithms for Constructing Extracted Ion Chromatograms and Detecting Chromatographic Peaks.	Analytical Chemistry	2017
27975228	Protein Structural Analysis via Mass Spectrometry-Based Proteomics.	Advances in Experimental Medicine and Biology	2016
27434812	Training in metabolomics research. I. Designing the experiment, collecting and extracting samples and generating metabolomics data.	J Mass Spectrom	2016
27434804	Training in metabolomics research. I. Designing the experiment, collecting and extracting samples and generating metabolomics data.	J Mass Spectrom	2016
27461032	ADAP-GC 3.0: Improved Peak Detection and Deconvolution of Co-eluting Metabolites from GC/TOF-MS Data for Metabolomics Studies.	Analytical Chemistry	2016
28239968	Training in metabolomics research. II. Processing and statistical analysis of metabolomics data, metabolite identification, pathway analysis, applications of metabolomics and its future.	J Mass Spectrom	2016
24688694	Spectral deconvolution for gas chromatography mass spectrometry-based metabolomics: current status and future perspectives.	Computational and Structural Biotechnology Journal	2013
22575888	The PHD and chromo domains regulate the ATPase activity of the human chromatin remodeler CHD4.	J Mol Biol	2012
22747237	ADAP-GC 2.0: deconvolution of coeluting metabolites from GC/TOF-MS data for metabolomics studies.	Analytical Chemistry	2012
21189417	Discovery of mouse spleen signaling responses to anthrax using label-free quantitative phosphoproteomics via mass spectrometry.	Mol Cell Proteomics	2011
21175198	Xlink-identifier: an automated data analysis platform for confident identifications of chemically cross-linked peptides using tandem mass spectrometry.	J Proteome Res	2011
20825247	An automated data analysis pipeline for GC-TOF-MS metabonomics studies.	Journal of Proteome Research	2010
21152398	Phosphoproteomics profiling of human skin fibroblast cells reveals pathways and proteins affected by low doses of ionizing radiation.	PLoS One	2010
19496583	Identification of cross-linked peptides after click-based enrichment using sequential collision-induced dissociation and electron transfer dissociation tandem mass spectrometry.	Anal Chem	2009
18442284	A computational strategy to analyze label-free temporal bottom-up proteomics data.	J Proteome Res	2008
18785766	Quantitative phosphoproteome analysis of lysophosphatidic acid induced chemotaxis applying dual-step (18)O labeling coupled with immobilized metal-ion affinity chromatography.	J Proteome Res	2008
18422353	Linear discriminant analysis-based estimation of the false discovery rate for phosphopeptide identifications.	J Proteome Res	2008
18205298	Comparative proteomics of human monkeypox and vaccinia intracellular mature and extracellular enveloped virions.	J Proteome Res	2008
17929957	Applying a targeted label-free approach using LC-MS AMT tags to evaluate changes in protein phosphorylation following phosphatase inhibition.	J Proteome Res	2007
16916104	Encoding of motion targets by waves in turtle visual cortex.	IEEE Transactions on Biomedical Engineering	2006
15825858	Encoding and decoding target locations with waves in the turtle visual cortex.	IEEE Transactions on Biomedical Engineering	2005