Author details

Full Name

Tyler W H Backman

Affiliation

Lawrence Berkeley National Laboratory

ORCID

Career Start Year

2008

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36416273	ClusterCAD 2.0: an updated computational platform for chimeric type I polyketide synthase and nonribosomal peptide synthetase design.	Nucleic Acids Res	2023
37948450	BayFlux: A Bayesian method to quantify metabolic Fluxes and their uncertainty at the genome scale.	PLoS Comput Biol	2023
36603501	Perspectives for self-driving labs in synthetic biology.	Curr Opin Biotechnol	2023
33634086	Multiomics Data Collection, Visualization, and Utilization for Guiding Metabolic Engineering.	Front Bioeng Biotechnol	2021
32412752	Chemoinformatic-Guided Engineering of Polyketide Synthases.	J Am Chem Soc	2020
31115703	Structural insights into dehydratase substrate selection for the borrelidin and fluvirucin polyketide synthases.	J Ind Microbiol Biotechnol	2019
29040649	ClusterCAD: a computational platform for type I modular polyketide synthase design.	Nucleic Acids Res	2018
29423743	Synthetic biology of polyketide synthases.	J Ind Microbiol Biotechnol	2018
29300340	Constraining Genome-Scale Models to Represent the Bow Tie Structure of Metabolism for <sup>13</sup>C Metabolic Flux Analysis.	Metabolites	2018
28826210	The Experiment Data Depot: A Web-Based Software Tool for Biological Experimental Data Storage, Sharing, and Visualization.	ACS Synth Biol	2017
28381205	The JBEI quantitative metabolic modeling library (jQMM): a python library for modeling microbial metabolism.	BMC Bioinformatics	2017
28420344	Erratum to: The JBEI quantitative metabolic modeling library (jQMM): a python library for modeling microbial metabolism.	BMC Bioinformatics	2017
28178331	Large-scale bioactivity analysis of the small-molecule assayed proteome.	PLoS One	2017
27367556	bioassayR: Cross-Target Analysis of Small Molecule Bioactivity.	J Chem Inf Model	2016
27650223	systemPipeR: NGS workflow and report generation environment.	BMC Bioinformatics	2016
24306871	Cheminformatic analysis of high-throughput compound screens.	Methods Mol Biol	2014
23633570	Juvenile hormone and its receptor, methoprene-tolerant, control the dynamics of mosquito gene expression.	Proc Natl Acad Sci U S A	2013
23962615	fmcsR: mismatch tolerant maximum common substructure searching in R.	Bioinformatics	2013
21576229	ChemMine tools: an online service for analyzing and clustering small molecules.	Nucleic Acids Res	2011
19307293	Computational and analytical framework for small RNA profiling by high-throughput sequencing.	RNA	2009
17999994	Update of ASRP: the Arabidopsis Small RNA Project database.	Nucleic Acids Res	2008

1 - 21 of 21

Matthew T Robey

Northwestern University

Career Start Year 2014

Number of shared co-authors 0

Matthew J O'Meara

University of Michigan ann arbor

Career Start Year 2013

Number of shared co-authors 0

Wail Ba-Alawi

Princess Margaret Cancer Centre, University Health Network, University Ave.

Career Start Year 2013

Number of shared co-authors 0

Peter Cimermancic

Verily Life Sciences LLC

Career Start Year 2011

Number of shared co-authors 0

Marnix H Medema

Wageningen University

Career Start Year 2008

Number of shared co-authors 0

Evan E Bolton

National Center for Biotechnology Information, National Institutes of Health

Career Start Year 2007

Number of shared co-authors 2

Areejit Samal

The Institute of Mathematical Sciences (IMSc)

Career Start Year 2006

Number of shared co-authors 0

Ola Spjuth

Department of Pharmaceutical Biosciences, Uppsala University

Career Start Year 2006

Number of shared co-authors 0

Neil Swainston

Institute of Systems, University of Liverpool

Career Start Year 2006

Number of shared co-authors 2

Iain M Wallace

Novartis Institutes for BioMedical Research

Career Start Year 2005

Number of shared co-authors 0

Sanjay J Swamidass

Washington University School of Medicine

Career Start Year 2005

Number of shared co-authors 0

Rajarshi Guha

Vertex Pharmaceuticals

Career Start Year 2004

Number of shared co-authors 0

Anna Gaulton

European Bioinformatics Institute (EMBL-EBI)

Career Start Year 2002

Number of shared co-authors 0

Gerald H Lushington

Inc. 16 Dekalb Pike

Career Start Year 2002

Number of shared co-authors 0

Yunchen Gong

University of Toronto

Career Start Year 2000

Number of shared co-authors 0

Paul A Clemons

Broad Institute

Career Start Year 1999

Number of shared co-authors 1

Alan Bridge

carnegie mellon university

Career Start Year 1998

Number of shared co-authors 1

Stephan C Sch??rer

Institute for Data Science and Computing, University of Miami

Career Start Year 1998

Number of shared co-authors 1

Yingyao Zhou

Genomics Institute of the Novartis Research Foundation

Career Start Year 1997

Number of shared co-authors 0

Vlado Dan????k

Broad Institute

Career Start Year 1997

Number of shared co-authors 1

Niklas Blomberg

Universitat Tubingen, Institut fur Arbeitsmedizin

Career Start Year 1996

Number of shared co-authors 1

Cristian G Bologa

University of New Mexico School of Medicine

Career Start Year 1995

Number of shared co-authors 1

Joel S Bader

Johns Hopkins University

Career Start Year 1993

Number of shared co-authors 1

Tudor I Oprea

Expert Systems Inc.

Career Start Year 1993

Number of shared co-authors 1

Ram Samudrala

Jacobs School of Medicine and Biomedical Sciences, University at Buffalo

Career Start Year 1990

Number of shared co-authors 0

John P Overington

Institute of Cardiovascular Science, University College London

Career Start Year 1988

Number of shared co-authors 0

David S Wishart

University of Alberta

Career Start Year 1986

Number of shared co-authors 1

Christoph Steinbeck

Institute for Inorganic and Analytical Chemistry, Friedrich Schiller University Jena

Career Start Year 1986

Number of shared co-authors 1

Richard Bonneau

Center for Computational Biology (CCB), Flatiron Institute, Simons Foundation

Career Start Year 1983

Number of shared co-authors 0

Stephen H Bryant

National Center for Biotechnology Information

Career Start Year 1973

Number of shared co-authors 0

row(s) 1 - 30 of 30

Hector Garcia Martin

Lawrence Berkeley National Laboratory

Co-authored papers 11

Jay D Keasling

University of California berkeley

Co-authored papers 10

Thomas Girke

Institute for Integrative Genome Biology, University of California Riverside

Co-authored papers 7

Nathan J Hillson

Lawrence Berkeley National Laboratory

Co-authored papers 4

Edward E K Baidoo

Joint BioEnergy Institute

Co-authored papers 3

Adam P Arkin

Lawrence Berkeley National Laboratory

Co-authored papers 2

Tijana Radivojevic

Lawrence Berkeley National Laboratory, United States Joint BioEnergy Institute

Co-authored papers 2

Paul D Adams

Lawrence Berkeley National Laboratory

Co-authored papers 2

Jose Manuel Mart??

Lawrence Livermore National Laboratory

Co-authored papers 2

Aindrila Mukhopadhyay

Joint BioEnergy Institute

Co-authored papers 2

Christopher J Petzold

Joint BioEnergy Institute

Co-authored papers 2

Gyorgy Babnigg

Argonne National Laboratory

Co-authored papers 1

Daniel S Evans

California Pacific Medical Center, Research Institute

Co-authored papers 1

Lucas Waldburger

University of California berkeley

Co-authored papers 1

Gregg T Beckham

Center for Bioenergy Innovation, Oak Ridge National Laboratory

Co-authored papers 1

Deb Agarwal

Lawrence Berkeley National Laboratory

Co-authored papers 1

Jess Sustarich

Joint BioEnergy Institute

Co-authored papers 1

James M Carothers

Molecular Engineering & Sciences Institute, University of Washington

Co-authored papers 1

Kevin P White

Co-authored papers 1

Jeremy Zucker

Pacific Northwest National Laboratory

Co-authored papers 1

Blake A Simmons

Joint BioEnergy Institute, USA Lawrence Berkeley National Laboratory

Co-authored papers 1

Dan Arnold

Lawrence Berkeley National Laboratory

Co-authored papers 1

Deepanwita Banerjee

Joint BioEnergy Institute, Lawrence Berkeley National Laboratory

Co-authored papers 1

Kristofer E Bouchard

Redwood Center for Theoretical Neuroscience, UC Berkeley.

Co-authored papers 1

Lavanya Ramakrishnan

Lawrence Berkeley National Laboratory

Co-authored papers 1

Christopher J Mungall

International Society for Biocuration, Lawrence Berkeley National Laboratory, University of Edinburgh, University of Edinburgh School of Biological Sciences

Co-authored papers 1

Anup Singh

Joint BioEnergy Institute, Lawrence Livermore National Laboratory

Co-authored papers 1

Zhen Zou

Chinese Academy of Sciences

Co-authored papers 1

Sean Peisert

Lawrence Berkeley National Laboratory, United States University of California davis

Co-authored papers 1

Deepti Tanjore

Lawrence Berkeley National Laboratory