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Author Details

Denis Torre
Department of Pharmacological Sciences, Icahn School of Medicine at Mount Sinai
2018
18
12
PMIDPaper TitleJournal TitlePublished Year
34694680Transcriptomic profiling of recessive dystrophic epidermolysis bullosa wounded skin highlights drug repurposing opportunities to improve wound healing.Exp Dermatol2022
36111352Age alters the oncogenic trajectory toward luminal mammary tumors that activate unfolded proteins responses.Aging Cell2022
36207580A multi-omic analysis of MCF10A cells provides a resource for integrative assessment of ligand-mediated molecular and phenotypic responses.Commun Biol2022
34694680Transcriptomic profiling of recessive dystrophic epidermolysis bullosa wounded skin highlights drug repurposing opportunities to improve wound healing.Exp Dermatol2022
35325615PPARdelta activation induces metabolic and contractile maturation of human pluripotent stem cell-derived cardiomyocytes.Cell Stem Cell2022
36111352Age alters the oncogenic trajectory toward luminal mammary tumors that activate unfolded proteins responses.Aging Cell2022
36207580A multi-omic analysis of MCF10A cells provides a resource for integrative assessment of ligand-mediated molecular and phenotypic responses.Commun Biol2022
35325615PPARdelta activation induces metabolic and contractile maturation of human pluripotent stem cell-derived cardiomyocytes.Cell Stem Cell2022
34019655KEA3: improved kinase enrichment analysis via data integration.Nucleic Acids Res2021
34019655KEA3: improved kinase enrichment analysis via data integration.Nucleic Acids Res2021
33795767Transcriptome analysis of human dermal fibroblasts following red light phototherapy.Sci Rep2021
33795767Transcriptome analysis of human dermal fibroblasts following red light phototherapy.Sci Rep2021
32156561Interoperable RNA-Seq analysis in the cloud.Biochim Biophys Acta Gene Regul Mech2020
32156561Interoperable RNA-Seq analysis in the cloud.Biochim Biophys Acta Gene Regul Mech2020
31114885Geneshot: search engine for ranking genes from arbitrary text queries.Nucleic Acids Res2019
31677972FAIRshake: Toolkit to Evaluate the FAIRness of Research Digital Resources.Cell Syst2019
31114921ChEA3: transcription factor enrichment analysis by orthogonal omics integration.Nucleic Acids Res2019
31114885Geneshot: search engine for ranking genes from arbitrary text queries.Nucleic Acids Res2019
31677972FAIRshake: Toolkit to Evaluate the FAIRness of Research Digital Resources.Cell Syst2019
31114921ChEA3: transcription factor enrichment analysis by orthogonal omics integration.Nucleic Acids Res2019
29140462Data Portal for the Library of Integrated Network-based Cellular Signatures (LINCS) program: integrated access to diverse large-scale cellular perturbation response data.Nucleic Acids Res2018
29199020The Library of Integrated Network-Based Cellular Signatures NIH Program: System-Level Cataloging of Human Cells Response to Perturbations.Cell Syst2018
29485625Datasets2Tools, repository and search engine for bioinformatics datasets, tools and canned analyses.Sci Data2018
29568059Cell-autonomous and cell non-autonomous downregulation of tumor suppressor DAB2IP by microRNA-149-3p promotes aggressiveness of cancer cells.Cell Death Differ2018
29636450Massive mining of publicly available RNA-seq data from human and mouse.Nat Commun2018
30447998BioJupies: Automated Generation of Interactive Notebooks for RNA-Seq Data Analysis in the Cloud.Cell Syst2018
29800326eXpression2Kinases (X2K) Web: linking expression signatures to upstream cell signaling networks.Nucleic Acids Res2018
29917015Sustainable data and metadata management at the BD2K-LINCS Data Coordination and Integration Center.Sci Data2018
29800326eXpression2Kinases (X2K) Web: linking expression signatures to upstream cell signaling networks.Nucleic Acids Res2018
29199020The Library of Integrated Network-Based Cellular Signatures NIH Program: System-Level Cataloging of Human Cells Response to Perturbations.Cell Syst2018
29636450Massive mining of publicly available RNA-seq data from human and mouse.Nat Commun2018
29485625Datasets2Tools, repository and search engine for bioinformatics datasets, tools and canned analyses.Sci Data2018
29140462Data Portal for the Library of Integrated Network-based Cellular Signatures (LINCS) program: integrated access to diverse large-scale cellular perturbation response data.Nucleic Acids Res2018
29568059Cell-autonomous and cell non-autonomous downregulation of tumor suppressor DAB2IP by microRNA-149-3p promotes aggressiveness of cancer cells.Cell Death Differ2018
29917015Sustainable data and metadata management at the BD2K-LINCS Data Coordination and Integration Center.Sci Data2018
30447998BioJupies: Automated Generation of Interactive Notebooks for RNA-Seq Data Analysis in the Cloud.Cell Syst2018
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Collaborators

Avi Ma'ayan
Icahn School of Medicine at Mount Sinai
Co-authored papers 17
Alexander Lachmann
Co-authored papers 9
Kathleen M Jagodnik
Massachusetts General Hospital Department of Psychiatry, Harvard Medical School.
Co-authored papers 7
Alexandra B Keenan
Co-authored papers 5
Maxim V Kuleshov
Co-authored papers 5
Stephan C Sch??rer
Institute for Data Science and Computing, University of Miami
Co-authored papers 5
Dušica VidoviĿ
Co-authored papers 4
Daniel J Cooper
Miller School of Medicine, University of Miami
Co-authored papers 4
Lily Wang
College of Science, The Australian National University
Co-authored papers 4
Daniel J B Clarke
Icahn School of Medicine at Mount Sinai
Co-authored papers 4
Arya Ajay
National Center for Advancing Translational Science, 9800 Medical Center Drive
Co-authored papers 4
Moshe C Silverstein
Hunter College of The City University of New York
Co-authored papers 4
Sherry L Jenkins
Department of Pharmacological Sciences, Icahn School of Medicine at Mount Sinai
Co-authored papers 3
Amar Koleti
Co-authored papers 3
Raymond Terryn
Co-authored papers 3
Vasileios Stathias
Co-authored papers 3
Brian M Schilder
UK Dementia Research Institute, Imperial College London
Co-authored papers 3
Zichen Wang
Icahn School of Medicine at Mount Sinai
Co-authored papers 3
Michele Forlin
Co-authored papers 3
Mario Medvedovic
Co-authored papers 3
Caty Chung
Co-authored papers 3
Behrouz Shamsaei
Co-authored papers 2
Kaylyn Devlin
Co-authored papers 2
Nicholas A Clark
Co-authored papers 2
Heidi S Feiler
Co-authored papers 2
Laura M Heiser
Oregon Health Sciences University
Co-authored papers 2
Malvina Papanastasiou
Co-authored papers 2
Albert Lee
Co-authored papers 2
Gordon B Mills
Knight Cancer Institute, Oregon Health and Sciences University
Co-authored papers 2
John Erol Evangelista
Co-authored papers 2
Release 1.2