Author details

Full Name

Anne Niknejad

Affiliation

University of Lausanne

ORCID

Career Start Year

2004

Papers

H Index

Expertise

CM4AI Collaborator

Dexter Pratt (CM4AI)

PMID	Paper Title	Journal Title	Published Year
37137910	Identification of biomarkers for glycaemic deterioration in type 2 diabetes.	Nat Commun	2023
32637990	The Minimum Information about a Molecular Interaction CAusal STatement (MI2CAST).	Bioinformatics	2021
33037820	The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals.	Nucleic Acids Res	2021
32077582	Contribution of exome sequencing to the identification of genes involved in the response to clopidogrel in cardiovascular patients.	J Thromb Haemost	2020
30272209	Updates in Rhea: SPARQLing biochemical reaction data.	Nucleic Acids Res	2019
29688381	Expert curation for building network-based dynamical models: a case study on atherosclerotic plaque formation.	Database (Oxford)	2018
27789701	Updates in Rhea - an expert curated resource of biochemical reactions.	Nucleic Acids Res	2017
27980062	Updates in Rhea - an expert curated resource of biochemical reactions.	Nucleic Acids Res	2017
27799067	Identification of a RAI1-associated disease network through integration of exome sequencing, transcriptomics, and 3D genomics.	Genome Med	2016
27716031	Boolean regulatory network reconstruction using literature based knowledge with a genetic algorithm optimization method.	BMC Bioinformatics	2016
25332395	Updates in Rhea--a manually curated resource of biochemical reactions.	Nucleic Acids Res	2015
26244885	An Extended, Boolean Model of the Septation Initiation Network in S.Pombe Provides Insights into Its Regulation.	PLoS One	2015
25943471	The SwissLipids knowledgebase for lipid biology.	Bioinformatics	2015
25957950	The Confidence Information Ontology: a step towards a standard for asserting confidence in annotations.	Database (Oxford)	2015
25009735	Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon.	J Biomed Semantics	2014
23487185	Uncovering hidden duplicated content in public transcriptomics data.	Database (Oxford)	2013
22285560	vHOG, a multispecies vertebrate ontology of homologous organs groups.	Bioinformatics	2012
15707372	Experiments in searching small proteins in unannotated large eukaryotic genomes.	J Proteome Res	2005
15274127	In vitro and in silico processes to identify differentially expressed proteins.	Proteomics	2004
15221758	High-performance peptide identification by tandem mass spectrometry allows reliable automatic data processing in proteomics.	Proteomics	2004

1 - 20 of 20

Benjamin M Gyori

Khoury College of Computer Sciences, Northeastern University

Career Start Year 2014

Number of shared co-authors 14

Gergely Csaba

Ludwig-Maximilians-Universitat Munchen

Career Start Year 2007

Number of shared co-authors 0

Jan Baumbach

University of Hamburg

Career Start Year 2006

Number of shared co-authors 2

Hai Fang

University of Bristol

Career Start Year 2006

Number of shared co-authors 4

Mikael Huss

Stockholm University

Career Start Year 2003

Number of shared co-authors 0

Johan Rung

Uppsala University

Career Start Year 2001

Number of shared co-authors 0

Andrew I Su

The Scripps Research Institute

Career Start Year 2001

Number of shared co-authors 2

Ana Conesa

Institute for Integrative Systems Biology, Spanish National Research Council (CSIC)

Career Start Year 2000

Number of shared co-authors 4

Hedi Peterson

Institute of Computer Science, University of Tartu

Career Start Year 2000

Number of shared co-authors 4

Gary D Bader

University of Toronto

Career Start Year 2000

Number of shared co-authors 10

Josep F Abril

University of Barcelona

Career Start Year 2000

Number of shared co-authors 4

Ralf Herwig

Max Planck Institute for Molecular Genetics

Career Start Year 1998

Number of shared co-authors 1

Lars Juhl Jensen

Novo Nordisk Foundation Center for Protein Research, University of Copenhagen

Career Start Year 1998

Number of shared co-authors 6

Igor Jurisica

Schroeder Arthritis Institute

Career Start Year 1998

Number of shared co-authors 11

Fabien Campagne

Weill Cornell Medical College

Career Start Year 1998

Number of shared co-authors 0

Georg Fuellen

Rostock University Medical Center

Career Start Year 1996

Number of shared co-authors 1

Ralf Zimmer

Ludwig-Maximilians-Universitat Munchen

Career Start Year 1995

Number of shared co-authors 0

Huaiyu Mi

University of Southern California

Career Start Year 1995

Number of shared co-authors 26

Edward M Marcotte

University of Texas

Career Start Year 1993

Number of shared co-authors 3

Bianca Habermann

Aix Marseille University, CNRS, Turing Center for Living Systems

Career Start Year 1993

Number of shared co-authors 5

Erik L L Sonnhammer

Stockholm University

Career Start Year 1992

Number of shared co-authors 5

Andreas Beyer

University of Cologne

Career Start Year 1991

Number of shared co-authors 2

Winston Hide

Harvard Medical School

Career Start Year 1991

Number of shared co-authors 9

Miguel A Andrade-Navarro

Institute of Organismic and Molecular Evolution, Johannes Gutenberg University

Career Start Year 1991

Number of shared co-authors 3

John Quackenbush

Harvard T. H. Chan School of Public Health

Career Start Year 1989

Number of shared co-authors 8

Shankar Subramaniam

University of California

Career Start Year 1989

Number of shared co-authors 3

Javier De Las Rivas

Cancer Research Centre (IBMCC/CSIC/USAL/IBSAL)

Career Start Year 1989

Number of shared co-authors 10

Lincoln Stein

Ontario Institute for Cancer Research, University Avenue

Career Start Year 1986

Number of shared co-authors 11

Alfonso Valencia

Josep Carreras Leukaemia Research Institute (IJC)

Career Start Year 1986

Number of shared co-authors 18

Stuart Aitken

Queensland Children's Hospital

Career Start Year 1982

Number of shared co-authors 2

row(s) 1 - 30 of 30

Ioannis Xenarios

University of Lausanne

Co-authored papers 10

Lydie Bougueleret

carnegie mellon university

Co-authored papers 7

Alan Bridge

carnegie mellon university

Co-authored papers 6

Marc Robinson-Rechavi

University of Lausanne

Co-authored papers 5

Nevila Hyka-Nouspikel

Centre Medical Universitaire

Co-authored papers 5

Frederic B Bastian

University of Lausanne

Co-authored papers 5

Lucila Aimo

Centre Medical Universitaire

Co-authored papers 5

Aur??lie Comte

University of Lausanne

Co-authored papers 4

Anne Morgat

Centre Medical Universitaire

Co-authored papers 4

Elisabeth Coudert

Centre Medical Universitaire

Co-authored papers 4

Nicole Redaschi

Co-authored papers 4

Kristian B Axelsen

Centre Medical Universitaire

Co-authored papers 4

Marco Pagni

Co-authored papers 2

Cristina Casals

Universidad Complutense

Co-authored papers 2

Julien Roux

Karolinska Institutet

Co-authored papers 2

Christopher J Mungall

International Society for Biocuration, Lawrence Berkeley National Laboratory, University of Edinburgh, University of Edinburgh School of Biological Sciences

Co-authored papers 2

Pascale Gaudet

University of Geneva

Co-authored papers 2

Sandra Orchard

EMBL's European Bioinformatics Institute (EMBL-EBI)

Co-authored papers 2

Suzanna E Lewis

Lawrence Berkeley National Laboratory

Co-authored papers 2

Melissa A Haendel

American Medical Informatics Association, Oregon Health and Science University, Oregon State University, University of Colorado Anschutz Medical Campus, University of North Carolina at Chapel Hill, University of Wisconsin-Madison

Co-authored papers 1

Livia Perfetto

Department of Biology and Biotechnologies "Charles Darwin", La Sapienza University

Co-authored papers 1

Dexter Pratt (CM4AI)

UC San Diego

Co-authored papers 1

Emma Ahlqvist

Co-authored papers 1

James P Balhoff

Renaissance Computing Institute, University of North Carolina

Co-authored papers 1