Author details

Full Name

Steven Maere

Affiliation

Ghent University

ORCID

Career Start Year

2005

Papers

H Index

Expertise

CM4AI Collaborator

Trey Ideker (CM4AI)

PMID	Paper Title	Journal Title	Published Year
37253069	Predicting yield of individual field-grown rapeseed plants from rosette-stage leaf gene expression.	PLoS Comput Biol	2023
37793018	Interspecies co-expression analysis of lateral root development using inducible systems in rice, Medicago, and Arabidopsis.	Plant J	2023
37996870	Monitoring of drought stress and transpiration rate using proximal thermal and hyperspectral imaging in an indoor automated plant phenotyping platform.	Plant Methods	2023
34406368	ksrates: positioning whole-genome duplications relative to speciation events in KS distributions.	Bioinformatics	2022
35432426	Spatial Regression Models for Field Trials: A Comparative Study and New Ideas.	Front Plant Sci	2022
33692820	Proximal Hyperspectral Imaging Detects Diurnal and Drought-Induced Changes in Maize Physiology.	Front Plant Sci	2021
33788927	Drought affects the rate and duration of organ growth but not inter-organ growth coordination.	Plant Physiol	2021
32943451	Vascular transcription factors guide plant epidermal responses to limiting phosphate conditions.	Science	2020
33346944	Using single-plant-omics in the field to link maize genes to functions and phenotypes.	Mol Syst Biol	2020
31071565	Endoreplication as a potential driver of cell wall modifications.	Curr Opin Plant Biol	2019
31636425	Interspecific hybridization facilitates niche adaptation in beer yeast.	Nat Ecol Evol	2019
28869826	Origins, evolution, domestication and diversity of Saccharomyces beer yeasts.	Curr Opin Biotechnol	2018
29967517	Fern genomes elucidate land plant evolution and cyanobacterial symbioses.	Nat Plants	2018
30115738	A Spatiotemporal DNA Endoploidy Map of the Arabidopsis Root Reveals Roles for the Endocycle in Root Development and Stress Adaptation.	Plant Cell	2018
29507322	The Apicomplexa-specific glucosamine-6-phosphate N-acetyltransferase gene family encodes a key enzyme for glycoconjugate synthesis with potential as therapeutic target.	Sci Rep	2018
28730636	The reduction in maize leaf growth under mild drought affects the transition between cell division and cell expansion and cannot be restored by elevated gibberellic acid levels.	Plant Biotechnol J	2018
28544878	Evolutionary Context Improves Regulatory Network Predictions.	Cell Syst	2017
28100708	The Origin of Floral Organ Identity Quartets.	Plant Cell	2017
29061868	Reciprocally Retained Genes in the Angiosperm Lineage Show the Hallmarks of Dosage Balance Sensitivity.	Plant Cell	2017
26754667	Combined Large-Scale Phenotyping and Transcriptomics in Maize Reveals a Robust Growth Regulatory Network.	Plant Physiol	2016
27729396	Leaf Growth Response to Mild Drought: Natural Variation in Arabidopsis Sheds Light on Trait Architecture.	Plant Cell	2016
27610566	Domestication and Divergence of Saccharomyces cerevisiae Beer Yeasts.	Cell	2016
26744215	Gene Duplicability of Core Genes Is Highly Consistent across All Angiosperms.	Plant Cell	2016
26578065	A coherent transcriptional feed-forward motif model for mediating auxin-sensitive PIN3 expression during lateral root development.	Nat Commun	2015
26438786	A Conserved Core of Programmed Cell Death Indicator Genes Discriminates Developmentally and Environmentally Induced Programmed Cell Death in Plants.	Plant Physiol	2015
26357925	Correlation analysis of the transcriptome of growing leaves with mature leaf parameters in a maize RIL population.	Genome Biol	2015
24709143	Interview with Steven Maere.	Trends Plant Sci	2014
24835588	Analysis of 41 plant genomes supports a wave of successful genome duplications in association with the Cretaceous-Paleogene boundary.	Genome Res	2014
24958926	Tangled up in two: a burst of genome duplications at the end of the Cretaceous and the consequences for plant evolution.	Philos Trans R Soc Lond B Biol Sci	2014
24529374	The TPLATE adaptor complex drives clathrin-mediated endocytosis in plants.	Cell	2014
24709144	Modeling the evolution of molecular systems from a mechanistic perspective.	Trends Plant Sci	2014
22936721	Inference of genome duplications from age distributions revisited.	Mol Biol Evol	2013
23943861	Predicting gene function from uncontrolled expression variation among individual wild-type Arabidopsis plants.	Plant Cell	2013
23382190	Convergent gene loss following gene and genome duplications creates single-copy families in flowering plants.	Proc Natl Acad Sci U S A	2013
22821009	Gamma paleohexaploidy in the stem lineage of core eudicots: significance for MADS-box gene and species diversification.	Mol Biol Evol	2012
23239941	Reconstruction of ancestral metabolic enzymes reveals molecular mechanisms underlying evolutionary innovation through gene duplication.	PLoS Biol	2012
22855938	Expansive evolution of the trehalose-6-phosphate phosphatase gene family in Arabidopsis.	Plant Physiol	2012
21278188	PiNGO: a Cytoscape plugin to find candidate genes in biological networks.	Bioinformatics	2011
20051987	2R or not 2R is not the question anymore.	Nat Rev Genet	2010
20706207	Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana.	Mol Syst Biol	2010
19325131	Plants with double genomes might have had a better chance to survive the Cretaceous-Tertiary extinction event.	Proc Natl Acad Sci U S A	2009
19652647	The evolutionary significance of ancient genome duplications.	Nat Rev Genet	2009
18402676	Extracting expression modules from perturbational gene expression compendia.	BMC Syst Biol	2008
17493254	Validating module network learning algorithms using simulated data.	BMC Bioinformatics	2007
17947979	Integration of biological networks and gene expression data using Cytoscape.	Nat Protoc	2007
17329565	The Arabidopsis thaliana homolog of yeast BRE1 has a function in cell cycle regulation during early leaf and root growth.	Plant Cell	2007
16507168	Nonrandom divergence of gene expression following gene and genome duplications in the flowering plant Arabidopsis thaliana.	Genome Biol	2006
16723033	The gain and loss of genes during 600 million years of vertebrate evolution.	Genome Biol	2006
15800040	Modeling gene and genome duplications in eukaryotes.	Proc Natl Acad Sci U S A	2005
15972284	BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks.	Bioinformatics	2005

1 - 50 of 51

Saranga Wijeratne

The Ohio State University

Career Start Year 2012

Number of shared co-authors 0

Artem S Kasianov

Institute for Information Transmission Problems of the Russian Academy of Sciences

Career Start Year 2011

Number of shared co-authors 1

Salvador Capella-Gutierrez

Spanish National Bioinformatics Institute (INB/ELIXIR-ES)

Career Start Year 2009

Number of shared co-authors 1

Shao-Shan Carol Huang

Salk Institute for Biological Studies

Career Start Year 2009

Number of shared co-authors 1

Liangsheng Zhang

College of Agriculture and Biotechnology, Zhejiang University

Career Start Year 2009

Number of shared co-authors 1

Anne-Ruxandra Carvunis

University of Pittsburgh School of Medicine.

Career Start Year 2007

Number of shared co-authors 1

Fei He

Institute of Genetics and Developmental Biology, Chinese Academy of Sciences

Career Start Year 2007

Number of shared co-authors 0

Katrin Sameith

Center for Molecular and Cellular Bioengineering

Career Start Year 2006

Number of shared co-authors 0

Haibao Tang

Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University

Career Start Year 2005

Number of shared co-authors 1

Francesc L??pez-Gir??ldez

Yale Center for Genomic Analysis

Career Start Year 2005

Number of shared co-authors 0

Marie-Laure Martin-Magniette

Universite Paris-Saclay, CNRS, University of Evry

Career Start Year 2004

Number of shared co-authors 0

Stephen P Ficklin

Washington State University

Career Start Year 2004

Number of shared co-authors 1

Brad A Chapman

Harvard T.H. Chan School of Public Health

Career Start Year 2003

Number of shared co-authors 1

Brent Kronmiller

Center for Quantitative Life Sciences, Oregon State University

Career Start Year 2002

Number of shared co-authors 0

Aalt D J van Dijk

Wageningen University and Research

Career Start Year 2001

Number of shared co-authors 0

Ana Conesa

Institute for Integrative Systems Biology, Spanish National Research Council (CSIC)

Career Start Year 2000

Number of shared co-authors 1

Berend Snel

Utrecht University

Career Start Year 1998

Number of shared co-authors 0

Thomas Girke

Institute for Integrative Genome Biology, University of California Riverside

Career Start Year 1998

Number of shared co-authors 0

Christine Queitsch

University of Washington

Career Start Year 1997

Number of shared co-authors 0

Andrew D Farmer

National Center for Genome Resources

Career Start Year 1997

Number of shared co-authors 0

Todd C Mockler

Danforth Foundation

Career Start Year 1997

Number of shared co-authors 2

Todd J Vision

University of North Carolina

Career Start Year 1995

Number of shared co-authors 0

Martin J Lercher

Institute for Computer Science, Heinrich Heine University

Career Start Year 1994

Number of shared co-authors 2

Dennis Shasha

Courant Institute of Mathematical Sciences, New York University

Career Start Year 1994

Number of shared co-authors 1

Seung Y Rhee

Carnegie Institution for Science

Career Start Year 1992

Number of shared co-authors 1

Robert J Schmitz

University of Georgia

Career Start Year 1989

Number of shared co-authors 1

Doreen Ware

USDA ARS NAA Robert W. Holley Center for Agriculture and Health

Career Start Year 1989

Number of shared co-authors 0

Brian J Haas

Broad Institute of MIT and Harvard

Career Start Year 1981

Number of shared co-authors 0

Itai Yanai

Institute for Systems Genetics NYU Grossman School of Medicine

Career Start Year 1977

Number of shared co-authors 0

Joseph R Ecker

The Salk Institute for Biological Studies

Career Start Year 1973

Number of shared co-authors 1

row(s) 1 - 30 of 30

Martin Kuiper

Norwegian University of Science and Technology

Co-authored papers 6

Jeroen Raes

KU Leuven - University of Leuven

Co-authored papers 2

Keiichiro Ono

university of california san diego

Co-authored papers 2

Trey Ideker (CM4AI)

University of California San Diego

Co-authored papers 2

Michael Smoot

University of California

Co-authored papers 2

Jens Hollunder

Flanders Institute for Biotechnology, Ghent University

Co-authored papers 2

Koen Van Leemput

Technical University of Denmark

Co-authored papers 1

Iliana Avila-Campillo

New York University

Co-authored papers 1

Vuk Pavlovic

Co-authored papers 1

Ryan Kelley

Stanford University School of Medicine

Co-authored papers 1

Bruce R Conklin

Gladstone Institutes

Co-authored papers 1

Clotilde Teiling

Co-authored papers 1

Michael Creech

Technion - Israel Institute of Technology

Co-authored papers 1

Ruth Isserlin

University of Toronto

Co-authored papers 1

Lukas A Mueller

Boyce Thompson Institute (BTI)

Co-authored papers 1

John H Morris

University of California san francisco

Co-authored papers 1

Sarah Killcoyne

Cyted Ltd

Co-authored papers 1

Alexander R Pico

Institute of Data Science and Biotechnology, Gladstone Institutes

Co-authored papers 1

Anagha Joshi

University of Bergen

Co-authored papers 1

Benno Schwikowski

Center for Bioinformatics, Institut Pasteur CNRS

Co-authored papers 1

Melissa S Cline

Genomics Institute, University of California Santa Cruz

Co-authored papers 1

Rowan H Christmas

Co-authored papers 1

Ethan Cerami

Dana-Farber Cancer Institute

Co-authored papers 1

Guy J Warner

Co-authored papers 1

Benjamin E Gross

Memorial Sloan Kettering Cancer Center

Co-authored papers 1

Kristina Hanspers

Gladstone Institutes

Co-authored papers 1

Nerius Landys

Co-authored papers 1

Samad Lotia

Gladstone Institutes

Co-authored papers 1

Leroy Hood

Center for Phenomic Health, The Buck Institute for Research on Aging

Co-authored papers 1

Christopher T Workman

Technical University of Denmark

Co-authored papers 1

1 - 30

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