Author details

Full Name

Jeremy Johnson

Affiliation

ORCID

Career Start Year

2010

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37104599	Evolutionary constraint and innovation across hundreds of placental mammals.	Science	2023
35177770	The Antarctic Weddell seal genome reveals evidence of selection on cardiovascular phenotype and lipid handling.	Commun Biol	2022
36099278	The genomic landscape of canine osteosarcoma cell lines reveals conserved structural complexity and pathway alterations.	PLoS ONE	2022
36161960	Evolution of the ancestral mammalian karyotype and syntenic regions.	Proc Natl Acad Sci U S A	2022
35482869	Ancestry-inclusive dog genomics challenges popular breed stereotypes.	Science	2022
34767971	Whole-genome sequences shed light on the demographic history and contemporary genetic erosion of free-ranging jaguar (Panthera onca) populations.	J Genet Genomics	2022
34452470	The Origins and Future of Sentinel: An Early-Warning System for Pandemic Preemption and Response.	Viruses	2021
34097816	Hi-C scaffolded short- and long-read genome assemblies of the California sea lion are broadly consistent for syntenic inference across 45 million years of evolution.	Mol Ecol Resour	2021
32726638	Beaver and Naked Mole Rat Genomes Reveal Common Paths to Longevity.	Cell Rep	2020
33177663	Progressive Cactus is a multiple-genome aligner for the thousand-genome era.	Nature	2020
31341965	Canine osteosarcoma genome sequencing identifies recurrent mutations in <i>DMD</i> and the histone methyltransferase gene <i>SETD2</i>.	Commun Biol	2019
31570656	Comparative Genomics Reveals Shared Mutational Landscape in Canine Hemangiosarcoma and Human Angiosarcoma.	Mol Cancer Res	2019
31772017	Solenodon genome reveals convergent evolution of venom in eulipotyphlan mammals.	Proc Natl Acad Sci U S A	2019
30552105	A quantitative framework for characterizing the evolutionary history of mammalian gene expression.	Genome Res	2019
31181663	BarkBase: Epigenomic Annotation of Canine Genomes.	Genes (Basel)	2019
30892912	Low guanylyl cyclase activity in Weddell seals: implications for peripheral vasoconstriction and perfusion of the brain during diving.	Am J Physiol Regul Integr Comp Physiol	2019
29483247	A comprehensive genomic history of extinct and living elephants.	Proc Natl Acad Sci U S A	2018
29724721	<i>SETD2</i> Is Recurrently Mutated in Whole-Exome Sequenced Canine Osteosarcoma.	Cancer Res	2018
28053114	FEELnc: a tool for long non-coding RNA annotation and its application to the dog transcriptome.	Nucleic Acids Res	2017
29042551	Integrating evolutionary and regulatory information with a multispecies approach implicates genes and pathways in obsessive-compulsive disorder.	Nat Commun	2017
27119849	An Improved microRNA Annotation of the Canine Genome.	PLoS One	2016
27230688	Corrigendum: The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons.	Nat Genet	2016
26950095	The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons.	Nat Genet	2016
26377837	Exome sequencing of lymphomas from three dog breeds reveals somatic mutation patterns reflecting genetic background.	Genome Res	2015
25170157	Rabbit genome analysis reveals a polygenic basis for phenotypic change during domestication.	Science	2014
25402615	The draft genome sequence of the ferret (Mustela putorius furo) facilitates study of human respiratory disease.	Nat Biotechnol	2014
24625832	An improved canine genome and a comprehensive catalogue of coding genes and non-coding transcripts.	PLoS One	2014
25186727	The genomic substrate for adaptive radiation in African cichlid fish.	Nature	2014
25172923	The Naked Mole Rat Genome Resource: facilitating analyses of cancer and longevity-related adaptations.	Bioinformatics	2014
23598338	The African coelacanth genome provides insights into tetrapod evolution.	Nature	2013
22481358	The genomic basis of adaptive evolution in threespine sticklebacks.	Nature	2012
21881562	The genome of the green anole lizard and a comparative analysis with birds and mammals.	Nature	2011
21080946	Comparative physical maps derived from BAC end sequences of tilapia (Oreochromis niloticus).	BMC Genomics	2010