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Author Details

Andreas Prli??
University of California
1999
46
27
PMIDPaper TitleJournal TitlePublished Year
36540993Development and application of a computable genotype model in the GA4GH Variation Representation Specification.Pac Symp Biocomput2023
35072136GA4GH: International policies and standards for data sharing across genomic research and healthcare.Cell Genom2021
33270643SeqRepo: A system for managing local collections of biological sequences.PLoS One2020
30357411RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy.Nucleic Acids Res2019
31009453Analyzing the symmetrical arrangement of structural repeats in proteins with CE-Symm.PLoS Comput Biol2019
30735498BioJava 5: A community driven open-source bioinformatics library.PLoS Comput Biol2019
29457794Recon3D enables a three-dimensional view of gene variation in human metabolism.Nat Biotechnol2018
29864163Investigation of protein quaternary structure via stoichiometry and symmetry information.PLoS One2018
30129167hgvs: A Python package for manipulating sequence variants using HGVS nomenclature: 2018 Update.Hum Mutat2018
29850778NGL viewer: web-based molecular graphics for large complexes.Bioinformatics2018
27794042The RCSB protein data bank: integrative view of protein, gene and 3D structural information.Nucleic Acids Res2017
28362865Towards an efficient compression of 3D coordinates of macromolecular structures.PLoS One2017
28334105BioJava-ModFinder: identification of protein modifications in 3D structures from the Protein Data Bank.Bioinformatics2017
28296894Impact of genetic variation on three dimensional structure and function of proteins.PLoS One2017
29254494Mapping genetic variations to three-dimensional protein structures to enhance variant interpretation: a proposed framework.Genome Med2017
28574982MMTF-An efficient file format for the transmission, visualization, and analysis of macromolecular structures.PLoS Comput Biol2017
27551105Integrating genomic information with protein sequence and 3D atomic level structure at the RCSB protein data bank.Bioinformatics2016
25183487RCSB PDB Mobile: iOS and Android mobile apps to provide data access and visualization to the RCSB Protein Data Bank.Bioinformatics2015
25428375The RCSB Protein Data Bank: views of structural biology for basic and applied research and education.Nucleic Acids Res2015
25505094Detection of circular permutations within protein structures using CE-CP.Bioinformatics2015
24681267Systematic detection of internal symmetry in proteins using CE-Symm.J Mol Biol2014
23337870Trendspotting in the Protein Data Bank.FEBS Lett2013
23193259The RCSB Protein Data Bank: new resources for research and education.Nucleic Acids Res2013
22496628Circular permutation in proteins.PLoS Comput Biol2012
23236269Ten simple rules for the open development of scientific software.PLoS Comput Biol2012
22877863BioJava: an open-source framework for bioinformatics in 2012.Bioinformatics2012
21036868The RCSB Protein Data Bank: redesigned web site and web services.Nucleic Acids Res2011
21382834Quality assurance for the query and distribution systems of the RCSB Protein Data Bank.Database (Oxford)2011
20429930Integration of open access literature into the RCSB Protein Data Bank using BioLit.BMC Bioinformatics2010
20937596Pre-calculated protein structure alignments at the RCSB PDB website.Bioinformatics2010
20195550Will widgets and semantic tagging change computational biology?PLoS Comput Biol2010
19420069DASMI: exchanging, annotating and assessing molecular interaction data.Bioinformatics2009
18000006Ensembl 2008.Nucleic Acids Res2008
18936051The Protein Feature Ontology: a tool for the unification of protein feature annotations.Bioinformatics2008
18673527Integrating biological data--the Distributed Annotation System.BMC Bioinformatics2008
18689808BioJava: an open-source framework for bioinformatics.Bioinformatics2008
17148474Ensembl 2007.Nucleic Acids Res2007
17705273New tools and expanded data analysis capabilities at the Protein Structure Prediction Center.Proteins2007
17850653Integrating sequence and structural biology with DAS.BMC Bioinformatics2007
17068077SISYPHUS--structural alignments for proteins with non-trivial relationships.Nucleic Acids Res2007
16381931Ensembl 2006.Nucleic Acids Res2006
16204122Adding some SPICE to DAS.Bioinformatics2005
14693821WILMA-automated annotation of protein sequences.Bioinformatics2004
11835482Assessment of the CASP4 fold recognition category.Proteins2001
10964983Structure-derived substitution matrices for alignment of distantly related sequences.Protein Eng2000
10526359Sustained performance of knowledge-based potentials in fold recognition.Proteins1999
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Collaborators

Peter W Rose
University of California
Co-authored papers 24
Philip E Bourne
University of Virginia
Co-authored papers 13
Stephen K Burley
The State University of New Jersey
Co-authored papers 9
Tim Hubbard
Co-authored papers 9
Chunxiao Bi
University of California San Diego
Co-authored papers 9
Jose M Duarte
University of California San Diego
Co-authored papers 8
Helen M Berman
The State University of New Jersey
Co-authored papers 8
Thomas A Down
Co-authored papers 7
Jasmine Young
The State University of New Jersey
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Christine Zardecki
The State University of New Jersey
Co-authored papers 7
Cole H Christie
University of California
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Alexander S Rose
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Ewan Birney
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John D Westbrook
The State University of New Jersey
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Shuchismita Dutta
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David S Goodsell
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Reece K Hart
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Andrew D Yates
European Bioinformatics Institute
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Paul Flicek
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Michael Heuer
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Rachel Kramer Green
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Richard Holland
Eagle Genomics Ltd
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Fiona Cunningham
European Bioinformatics Institute
Co-authored papers 4
Brian P Hudson
The State University of New Jersey
Co-authored papers 3
Michael Schuster
CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences
Co-authored papers 3
Jianjiong Gao
Memorial Sloan Kettering Cancer Center
Co-authored papers 3
Luigi Di Costanzo
University of Naples Federico II
Co-authored papers 3
Damian Smedley
William Harvey Research Institute, Queen Mary University of London
Co-authored papers 3
Maria Voigt
The State University of New Jersey
Co-authored papers 3
Richard Durbin
University of Cambridge
Co-authored papers 3
Release 1.2