Author details

Full Name

Michael Smoot

Affiliation

University of California

ORCID

Career Start Year

2004

Papers

H Index

Expertise

CM4AI Collaborator

Trey Ideker (CM4AI)

PMID	Paper Title	Journal Title	Published Year
22916103	The protein architecture of human secretory vesicles reveals differential regulation of signaling molecule secretion by protein kinases.	PLoS One	2012
23132118	A travel guide to Cytoscape plugins.	Nat Methods	2012
21278188	PiNGO: a Cytoscape plugin to find candidate genes in biological networks.	Bioinformatics	2011
21886098	Assembling global maps of cellular function through integrative analysis of physical and genetic networks.	Nat Protoc	2011
21149340	Cytoscape 2.8: new features for data integration and network visualization.	Bioinformatics	2011
20307279	Improving pairwise sequence alignment accuracy using near-optimal protein sequence alignments.	BMC Bioinformatics	2010
20936779	A human MAP kinase interactome.	Nat Methods	2010
19478997	Fast statistical alignment.	PLoS Comput Biol	2009
18174180	NetworkBLAST: comparative analysis of protein networks.	Bioinformatics	2008
18819078	Exploring biological networks with Cytoscape software.	Curr Protoc Bioinformatics	2008
17947979	Integration of biological networks and gene expression data using Cytoscape.	Nat Protoc	2007
14759262	Versatile and open software for comparing large genomes.	Genome Biol	2004
14751975	Visualization of near-optimal sequence alignments.	Bioinformatics	2004

1 - 13 of 13

David Otasek

University of California San Diego

Career Start Year 2009

Number of shared co-authors 6

Aleksandar Stojmirovic

Janssen Research & Development LLC

Career Start Year 2007

Number of shared co-authors 2

Atanas Kamburov

Broad Institute of Harvard and MIT

Career Start Year 2007

Number of shared co-authors 2

Anna Ritz

Reed College

Career Start Year 2007

Number of shared co-authors 0

Fidel Ram??rez

Max Planck Institute of Immunobiology and Epigenetics

Career Start Year 2007

Number of shared co-authors 0

Jan Baumbach

University of Hamburg

Career Start Year 2006

Number of shared co-authors 5

Alberto Paccanaro

University of London

Career Start Year 2005

Number of shared co-authors 0

Arnaud Ceol

European Institute of Oncology IRCCS

Career Start Year 2004

Number of shared co-authors 5

Tanusya M Murali

Yong Loo Lin School of Medicine, National University of Singapore

Career Start Year 2003

Number of shared co-authors 0

Mario Albrecht

Institute for Knowledge Discovery, Graz University of Technology

Career Start Year 2002

Number of shared co-authors 6

Haiyuan Yu

Weill Institute for Cell and Molecular Biology, Cornell University

Career Start Year 2001

Number of shared co-authors 2

Lars Juhl Jensen

Novo Nordisk Foundation Center for Protein Research, University of Copenhagen

Career Start Year 1998

Number of shared co-authors 2

Paul Shannon

Institute for Systems Biology

Career Start Year 1998

Number of shared co-authors 6

Patrick Aloy

Institucio Catalana de Recerca i Estudis Avancats (ICREA)

Career Start Year 1997

Number of shared co-authors 2

Ron Shamir

Tel Aviv University

Career Start Year 1995

Number of shared co-authors 3

Ralf Zimmer

Ludwig-Maximilians-Universitat Munchen

Career Start Year 1995

Number of shared co-authors 2

Dennis Shasha

Courant Institute of Mathematical Sciences, New York University

Career Start Year 1994

Number of shared co-authors 1

Ioannis Xenarios

University of Lausanne

Career Start Year 1994

Number of shared co-authors 4

Bianca Habermann

Aix Marseille University, CNRS, Turing Center for Living Systems

Career Start Year 1993

Number of shared co-authors 0

Simon Kasif

Boston University

Career Start Year 1993

Number of shared co-authors 3

Jason E McDermott

Pacific Northwest National Laboratory

Career Start Year 1993

Number of shared co-authors 0

Edward M Marcotte

University of Texas

Career Start Year 1993

Number of shared co-authors 2

Joel S Bader

Johns Hopkins University

Career Start Year 1993

Number of shared co-authors 2

Erik L L Sonnhammer

Stockholm University

Career Start Year 1992

Number of shared co-authors 1

Robert Gentleman

Center for Computational Biomedicine, Harvard Medical School

Career Start Year 1991

Number of shared co-authors 0

Miguel A Andrade-Navarro

Institute of Organismic and Molecular Evolution, Johannes Gutenberg University

Career Start Year 1991

Number of shared co-authors 2

Mark Gerstein

Yale University

Career Start Year 1991

Number of shared co-authors 6

Alfonso Valencia

Josep Carreras Leukaemia Research Institute (IJC)

Career Start Year 1986

Number of shared co-authors 8

Lincoln Stein

Ontario Institute for Cancer Research, University Avenue

Career Start Year 1986

Number of shared co-authors 6

Thomas E Ferrin

Department of Pharmaceutical Chemistry, University of California San Francisco

Career Start Year 1981

Number of shared co-authors 6

row(s) 1 - 30 of 30

Trey Ideker (CM4AI)

University of California San Diego

Co-authored papers 8

Keiichiro Ono

university of california san diego

Co-authored papers 5

Pengliang Wang

Sun Yat-sen Memorial Hospital, Sun Yat-sen University

Co-authored papers 4

Johannes Ruscheinski

Co-authored papers 3

Gary D Bader

University of Toronto

Co-authored papers 3

William R Pearson

University of Virginia

Co-authored papers 2

Allan Kuchinsky

Co-authored papers 2

Steven Maere

Ghent University

Co-authored papers 2

Samad Lotia

Gladstone Institutes

Co-authored papers 2

Melissa S Cline

Genomics Institute, University of California Santa Cruz

Co-authored papers 2

Alexander R Pico

Institute of Data Science and Biotechnology, Gladstone Institutes

Co-authored papers 2

Suhaila White

The Salk Institute

Co-authored papers 1

Vuk Pavlovic

Co-authored papers 1

Adam M Phillippy

National Human Genome Research Institute, National Institutes of Health

Co-authored papers 1

Ryan Kelley

Stanford University School of Medicine

Co-authored papers 1

Russell Bell

Huntsman Cancer Institute at the University of Utah

Co-authored papers 1

Sudhir Sahasrabudhe

University of Medicine and Dentistry of New Jersey, New Jersey Medical School

Co-authored papers 1

Bruce R Conklin

Gladstone Institutes

Co-authored papers 1

Michael Creech

Technion - Israel Institute of Technology

Co-authored papers 1

Ruth Isserlin

University of Toronto

Co-authored papers 1

Rohith Srivas

Amgen Inc.

Co-authored papers 1

Colin N Dewey

Co-authored papers 1

John H Morris

University of California san francisco

Co-authored papers 1

Sarah Killcoyne

Cyted Ltd

Co-authored papers 1

Diane L Barber

University of California San Francisco

Co-authored papers 1

Benno Schwikowski

Center for Bioinformatics, Institut Pasteur CNRS

Co-authored papers 1

Chih-Yuan Chiang

United States Army Medical Research Institute of Infectious Diseases

Co-authored papers 1

Jill L Wegrzyn

University of Connecticut

Co-authored papers 1

Rintaro Saito

Institute for Advanced Biosciences, Keio University

Co-authored papers 1

Rowan H Christmas

Co-authored papers 1

1 - 30

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