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Author Details

Kristin E Burnum-Johnson
Pacific Northwest National Laboratory
2008
79
32
Emma Lundberg (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36796578Initiation of fatty acid biosynthesis in Pseudomonas putida KT2440.Metab Eng2023
37853489Elucidating regulatory processes of intense physical activity by multi-omics analysis.Mil Med Res2023
37778408Identification of a specific exporter that enables high production of aconitic acid in Aspergillus pseudoterreus.Metab Eng2023
37537586Engineering transcriptional regulation of pentose metabolism in Rhodosporidium toruloides for improved conversion of xylose to bioproducts.Microb Cell Fact2023
36993277Coupling microdroplet-based sample preparation, multiplexed isobaric labeling, and nanoflow peptide fractionation for deep proteome profiling of tissue microenvironment.bioRxiv2023
36991437Metabolic engineering to improve production of 3-hydroxypropionic acid from corn-stover hydrolysate in Aspergillus species.Biotechnol Biofuels Bioprod2023
37117207PeakDecoder enables machine learning-based metabolite annotation and accurate profiling in multidimensional mass spectrometry measurements.Nat Commun2023
37201565Engineering Rhodosporidium toruloides for production of 3-hydroxypropionic acid from lignocellulosic hydrolysate.Metab Eng2023
36065328Itaconic acid production is regulated by LaeA in <i>Aspergillus pseudoterreus</i>.Metab Eng Commun2022
35654359New Views of Old Proteins: Clarifying the Enigmatic Proteome.Mol Cell Proteomics2022
35838077Hanging drop sample preparation improves sensitivity of spatial proteomics.Lab Chip2022
35793793Uncovering Hidden Members and Functions of the Soil Microbiome Using <i>De Novo</i> Metaproteomics.J Proteome Res2022
35995792Muconic acid production from glucose and xylose in Pseudomonas putida via evolution and metabolic engineering.Nat Commun2022
34372702Unfolded Protein Response Inhibition Reduces Middle East Respiratory Syndrome Coronavirus-Induced Acute Lung Injury.mBio2021
37283847Preserved and variable spatial-chemical changes of lipids across tomato leaves in response to central vein wounding reveals potential origin of linolenic acid in signal transduction cascade.Plant Environ Interact2021
33883010Further engineering of R. toruloides for the production of terpenes from lignocellulosic biomass.Biotechnol Biofuels2021
33649493Surfactant-assisted one-pot sample preparation for label-free single-cell proteomics.Commun Biol2021
33898398Integration of Proteomics and Metabolomics Into the Design, Build, Test, Learn Cycle to Improve 3-Hydroxypropionic Acid Production in <i>Aspergillus pseudoterreus</i>.Front Bioeng Biotechnol2021
33758033From Plants to Ants: Fungal Modification of Leaf Lipids for Nutrition and Communication in the Leaf-Cutter Ant Fungal Garden Ecosystem.mSystems2021
33585414Multi-Omics Driven Metabolic Network Reconstruction and Analysis of Lignocellulosic Carbon Utilization in <i>Rhodosporidium toruloides</i>.Front Bioeng Biotechnol2021
34446837Moisture modulates soil reservoirs of active DNA and RNA viruses.Commun Biol2021
32966491Unveiling molecular signatures of preeclampsia and gestational diabetes mellitus with multi-omics and innovative cheminformatics visualization tools.Mol Omics2020
32024522Production of ent-kaurene from lignocellulosic hydrolysate in Rhodosporidium toruloides.Microb Cell Fact2020
31911630Automated mass spectrometry imaging of over 2000 proteins from tissue sections at 100-μm spatial resolution.Nat Commun2020
33425868High-Throughput Large-Scale Targeted Proteomics Assays for Quantifying Pathway Proteins in <i>Pseudomonas putida</i> KT2440.Front Bioeng Biotechnol2020
33396843From Prevention to Disease Perturbations: A Multi-Omic Assessment of Exercise and Myocardial Infarctions.Biomolecules2020
32775199Evaluation of chromosomal insertion loci in the Pseudomonas putida KT2440 genome for predictable biosystems design.Metab Eng Commun2020
30638385pmartR: Quality Control and Statistics for Mass Spectrometry-Based Biological Data.J Proteome Res2019
31723300High spatial resolution imaging of biological tissues using nanospray desorption electrospray ionization mass spectrometry.Nat Protoc2019
31798197Ion Mobility Spectrometry and the Omics: Distinguishing Isomers, Molecular Classes and Contaminant Ions in Complex Samples.Trends Analyt Chem2019
31607563The Long Noncoding RNA Paupar Modulates PAX6 Regulatory Activities to Promote Alpha Cell Development and Function.Cell Metab2019
31596564Uniformly <sup>15</sup>N-Labeled Recombinant Ricin A-Chain as an Internal Retention Time Standard for Increased Confidence in Forensic Identification of Ricin by Untargeted Nanoflow Liquid Chromatography-Tandem Mass Spectrometry.Anal Chem2019
29339515MERS-CoV and H5N1 influenza virus antagonize antigen presentation by altering the epigenetic landscape.Proc Natl Acad Sci U S A2018
29912205The MPLEx Protocol for Multi-omic Analyses of Soil Samples.J Vis Exp2018
30205969Application of multiplexed ion mobility spectrometry towards the identification of host protein signatures of treatment effect in pulmonary tuberculosis.Tuberculosis (Edinb)2018
29725592Urinary Virome Perturbations in Kidney Transplantation.Front Med (Lausanne)2018
29494212Evaluating lipid mediator structural complexity using ion mobility spectrometry combined with mass spectrometry.Bioanalysis2018
29718662High Spatial Resolution Imaging of Mouse Pancreatic Islets Using Nanospray Desorption Electrospray Ionization Mass Spectrometry.Anal Chem2018
29676905Quantitative Mass Spectrometry Imaging of Prostaglandins as Silver Ion Adducts with Nanospray Desorption Electrospray Ionization.Anal Chem2018
27958645Comparing identified and statistically significant lipids and polar metabolites in 15-year old serum and dried blood spot samples for longitudinal studies.Rapid Commun Mass Spectrom2017
28301728Coupling Front-End Separations, Ion Mobility Spectrometry, and Mass Spectrometry For Enhanced Multidimensional Biological and Environmental Analyses.Annu Rev Anal Chem (Palo Alto Calif)2017
28091625MPLEx: a method for simultaneous pathogen inactivation and extraction of samples for multi-omics profiling.Analyst2017
28392013Characterizing the lipid and metabolite changes associated with placental function and pregnancy complications using ion mobility spectrometry-mass spectrometry and mass spectrometry imaging.Placenta2017
29154144Multi-platform 'Omics Analysis of Human Ebola Virus Disease Pathogenesis.Cell Host Microbe2017
26734689Uncovering biologically significant lipid isomers with liquid chromatography, ion mobility spectrometry and mass spectrometry.Analyst2016
29276770SPE-IMS-MS: An automated platform for sub-sixty second surveillance of endogenous metabolites and xenobiotics in biofluids.Clin Mass Spectrom2016
27822525MPLEx: a Robust and Universal Protocol for Single-Sample Integrative Proteomic, Metabolomic, and Lipidomic Analyses.mSystems2016
27670688Simultaneous Proteomic Discovery and Targeted Monitoring using Liquid Chromatography, Ion Mobility Spectrometry, and Mass Spectrometry.Mol Cell Proteomics2016
27696597The fungal cultivar of leaf-cutter ants produces specific enzymes in response to different plant substrates.Mol Ecol2016
27620843Trp53 deficient mice predisposed to preterm birth display region-specific lipid alterations at the embryo implantation site.Sci Rep2016
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Collaborators

Pacific Northwest National Laboratory
Co-authored papers 36
Pacific Northwest National Laboratory
Co-authored papers 21
North Carolina State University
Co-authored papers 19
Pacific Northwest National Laboratory
Co-authored papers 19
Hanyang University
Co-authored papers 17
Co-authored papers 15
Pacific Northwest National Laboratory
Co-authored papers 13
Co-authored papers 12
Co-authored papers 12
Pacific Northwest National Laboratory
Co-authored papers 12
Pacific Northwest National Laboratory
Co-authored papers 11
Pacific Northwest National Laboratory
Co-authored papers 10
Pacific Northwest National Laboratory
Co-authored papers 9
Pacific Northwest National Laboratory
Co-authored papers 9
Pacific Northwest National Laboratory
Co-authored papers 7
Pacific Northwest National Laboratory
Co-authored papers 7
Pacific Northwest National Laboratory
Co-authored papers 7
University of Wisconsin - Madison
Co-authored papers 7
Pacific Northwest National Laboratory
Co-authored papers 7
Co-authored papers 6
Co-authored papers 6
Pacific Northwest National Laboratory
Co-authored papers 6
Co-authored papers 6
Mass Spectrometry Research Center, Vanderbilt University
Co-authored papers 5
Co-authored papers 4
Pacific Northwest National Laboratory
Co-authored papers 4
Co-authored papers 4
The University of North Carolina at Chapel Hill
Co-authored papers 4
Co-authored papers 4
Pacific Northwest National Laboratory
Co-authored papers 4