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Author Details

Bradford W Gibson
The Buck Institute for Research on Aging
1982
224
73
Nevan J Krogan (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
33534996Identification of Proteolysis Products in Protein Therapeutics through TMPP N-Terminal Tagging and Electron Transfer Dissociation Product Triggered Collisional Induced Dissociation Fragmentation.J Am Soc Mass Spectrom2021
33534996Identification of Proteolysis Products in Protein Therapeutics through TMPP N-Terminal Tagging and Electron Transfer Dissociation Product Triggered Collisional Induced Dissociation Fragmentation.J Am Soc Mass Spectrom2021
30810280JNK modifies neuronal metabolism to promote proteostasis and longevity.Aging Cell2019
31659173Proteome and Secretome Dynamics of Human Retinal Pigment Epithelium in Response to Reactive Oxygen Species.Sci Rep2019
31553904SILAC Analysis Reveals Increased Secretion of Hemostasis-Related Factors by Senescent Cells.Cell Rep2019
30810280JNK modifies neuronal metabolism to promote proteostasis and longevity.Aging Cell2019
31659173Proteome and Secretome Dynamics of Human Retinal Pigment Epithelium in Response to Reactive Oxygen Species.Sci Rep2019
31553904SILAC Analysis Reveals Increased Secretion of Hemostasis-Related Factors by Senescent Cells.Cell Rep2019
29105190An acetylatable lysine controls CRP function in E. coli.Mol Microbiol2018
30586434Temporal dynamics of liver mitochondrial protein acetylation and succinylation and metabolites due to high fat diet and/or excess glucose or fructose.PLoS One2018
30035354Simultaneous Quantification of the Acetylome and Succinylome by 'One-Pot' Affinity Enrichment.Proteomics2018
29514063The Mitochondrial Acylome Emerges: Proteomics, Regulation by Sirtuins, and Metabolic and Disease Implications.Cell Metab2018
29105190An acetylatable lysine controls CRP function in E. coli.Mol Microbiol2018
30035354Simultaneous Quantification of the Acetylome and Succinylome by 'One-Pot' Affinity Enrichment.Proteomics2018
30586434Temporal dynamics of liver mitochondrial protein acetylation and succinylation and metabolites due to high fat diet and/or excess glucose or fructose.PLoS One2018
29514063The Mitochondrial Acylome Emerges: Proteomics, Regulation by Sirtuins, and Metabolic and Disease Implications.Cell Metab2018
28654654Identification and characterization of AckA-dependent protein acetylation in Neisseria gonorrhoeae.PLoS One2017
29018123Characterization of Inner and Outer Membrane Proteins from <i>Francisella tularensis</i> Strains LVS and Schu S4 and Identification of Potential Subunit Vaccine Candidates.mBio2017
28458255Lysine desuccinylase SIRT5 binds to cardiolipin and regulates the electron transport chain.J Biol Chem2017
28661500PIQED: automated identification and quantification of protein modifications from DIA-MS data.Nat Methods2017
28654654Identification and characterization of AckA-dependent protein acetylation in Neisseria gonorrhoeae.PLoS One2017
28827567Multi-laboratory assessment of reproducibility, qualitative and quantitative performance of SWATH-mass spectrometry.Nat Commun2017
28188533Generation of High-Quality SWATH<sup>®</sup> Acquisition Data for Label-free Quantitative Proteomics Studies Using TripleTOF<sup>®</sup> Mass Spectrometers.Methods Mol Biol2017
28458255Lysine desuccinylase SIRT5 binds to cardiolipin and regulates the electron transport chain.J Biol Chem2017
28188533Generation of High-Quality SWATH<sup>®</sup> Acquisition Data for Label-free Quantitative Proteomics Studies Using TripleTOF<sup>®</sup> Mass Spectrometers.Methods Mol Biol2017
29018123Characterization of Inner and Outer Membrane Proteins from <i>Francisella tularensis</i> Strains LVS and Schu S4 and Identification of Potential Subunit Vaccine Candidates.mBio2017
28827567Multi-laboratory assessment of reproducibility, qualitative and quantitative performance of SWATH-mass spectrometry.Nat Commun2017
28661500PIQED: automated identification and quantification of protein modifications from DIA-MS data.Nat Methods2017
26729761Comparative Analyses of the Lipooligosaccharides from Nontypeable Haemophilus influenzae and Haemophilus haemolyticus Show Differences in Sialic Acid and Phosphorylcholine Modifications.Infect Immun2016
26729761Comparative Analyses of the Lipooligosaccharides from Nontypeable Haemophilus influenzae and Haemophilus haemolyticus Show Differences in Sialic Acid and Phosphorylcholine Modifications.Infect Immun2016
27358404Gadd45a Protein Promotes Skeletal Muscle Atrophy by Forming a Complex with the Protein Kinase MEKK4.J Biol Chem2016
27783938Vitamin D Promotes Protein Homeostasis and Longevity via the Stress Response Pathway Genes skn-1, ire-1, and xbp-1.Cell Rep2016
27590315Quantification of Lysine Acetylation and Succinylation Stoichiometry in Proteins Using Mass Spectrometric Data-Independent Acquisitions (SWATH).J Am Soc Mass Spectrom2016
27590315Quantification of Lysine Acetylation and Succinylation Stoichiometry in Proteins Using Mass Spectrometric Data-Independent Acquisitions (SWATH).J Am Soc Mass Spectrom2016
27783938Vitamin D Promotes Protein Homeostasis and Longevity via the Stress Response Pathway Genes skn-1, ire-1, and xbp-1.Cell Rep2016
27358404Gadd45a Protein Promotes Skeletal Muscle Atrophy by Forming a Complex with the Protein Kinase MEKK4.J Biol Chem2016
25411686Wavelet-based peak detection and a new charge inference procedure for MS/MS implemented in ProteoWizard's msConvert.J Proteome Res2015
25417765The E. coli sirtuin CobB shows no preference for enzymatic and nonenzymatic lysine acetylation substrate sites.Microbiologyopen2015
25411686Wavelet-based peak detection and a new charge inference procedure for MS/MS implemented in ProteoWizard's msConvert.J Proteome Res2015
25918343SIRT1 deacetylates RORγt and enhances Th17 cell generation.J Exp Med2015
25693799Large-Scale Interlaboratory Study to Develop, Analytically Validate and Apply Highly Multiplexed, Quantitative Peptide Assays to Measure Cancer-Relevant Proteins in Plasma.Mol Cell Proteomics2015
25811481SIRT3 and SIRT5 regulate the enzyme activity and cardiolipin binding of very long-chain acyl-CoA dehydrogenase.PLoS One2015
26398777Multiplexed, Scheduled, High-Resolution Parallel Reaction Monitoring on a Full Scan QqTOF Instrument with Integrated Data-Dependent and Targeted Mass Spectrometric Workflows.Anal Chem2015
26264774Protein acetylation dynamics in response to carbon overflow in Escherichia coli.Mol Microbiol2015
26390242Critical role of acetylation in tau-mediated neurodegeneration and cognitive deficits.Nat Med2015
26073543SIRT5 Regulates both Cytosolic and Mitochondrial Protein Malonylation with Glycolysis as a Major Target.Mol Cell2015
25987725SIRT1 deacetylates RORγt and enhances Th17 cell generation.J Exp Med2015
25987414MS1 Peptide Ion Intensity Chromatograms in MS2 (SWATH) Data Independent Acquisitions. Improving Post Acquisition Analysis of Proteomic Experiments.Mol Cell Proteomics2015
26025364Integration-independent Transgenic Huntington Disease Fragment Mouse Models Reveal Distinct Phenotypes and Life Span in Vivo.J Biol Chem2015
26264774Protein acetylation dynamics in response to carbon overflow in Escherichia coli.Mol Microbiol2015
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Collaborators

Buck Institute for Research on Aging
Co-authored papers 79
Co-authored papers 27
University of California San Francisco
Co-authored papers 15
Buck Institute for Research on Aging
Co-authored papers 12
Buck Institute for Research on Aging
Co-authored papers 11
Co-authored papers 11
Co-authored papers 11
Co-authored papers 10
Broad Institute of MIT and Harvard
Co-authored papers 9
Co-authored papers 8
University of Washington
Co-authored papers 7
Department of Pharmaceutical Chemistry, University of California san francisco
Co-authored papers 7
Co-authored papers 7
Co-authored papers 7
Co-authored papers 7
Co-authored papers 7
Co-authored papers 7
Co-authored papers 6
Memorial Sloan Kettering Cancer Center
Co-authored papers 6
Co-authored papers 6
Office of Cancer Clinical Proteomics Research, National Cancer Institute
Co-authored papers 6
Co-authored papers 6
Co-authored papers 6
Stritch School of Medicine, Loyola University Chicago
Co-authored papers 6
Co-authored papers 6
Neuroscience Institute, NYU Grossman School of Medicine
Co-authored papers 6
Buck Institute for Research on Aging, Cedars-Sinai Medical Center
Co-authored papers 6
Buck Institute for Research on Aging
Co-authored papers 6
Co-authored papers 5
Buck Institute for Research on Aging
Co-authored papers 5