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Author Details

Shirlee Wohl
The Scripps Research Institute
2014
25
15
PMIDPaper TitleJournal TitlePublished Year
36753510Genomic and phenotypic analyses suggest moderate fitness differences among Zika virus lineages.PLoS Negl Trop Dis2023
37391481Single-cell profiling of lncRNA expression during Ebola virus infection in rhesus macaques.Nat Commun2023
37105175Sample size calculations for pathogen variant surveillance in the presence of biological and systematic biases.Cell Rep Med2023
35970983Regional connectivity drove bidirectional transmission of SARS-CoV-2 in the Middle East during travel restrictions.Nat Commun2022
35411350Wastewater sequencing uncovers early, cryptic SARS-CoV-2 variant transmission.medRxiv2022
35798029Wastewater sequencing reveals early cryptic SARS-CoV-2 variant transmission.Nature2022
35814690Prediction of Antibiotic Susceptibility Profiles of <i>Vibrio cholerae</i> Isolates From Whole Genome Illumina and Nanopore Sequencing Data: CholerAegon.Front Microbiol2022
33104776Repeated Coronavirus Disease 2019 Molecular Testing: Correlation of Severe Acute Respiratory Syndrome Coronavirus 2 Culture With Molecular Assays and Cycle Thresholds.Clin Infect Dis2021
33749660Genomic diversity of SARS-CoV-2 during early introduction into the Baltimore-Washington metropolitan area.JCI Insight2021
34143732Regional sequencing collaboration reveals persistence of the T12 <i>Vibrio cholerae</i> O1 lineage in West Africa.Elife2021
34228722Sample size calculation for phylogenetic case linkage.PLoS Comput Biol2021
32817965Genomic Diversity of SARS-CoV-2 During Early Introduction into the United States National Capital Region.medRxiv2020
32045407Combining genomics and epidemiology to track mumps virus transmission in the United States.PLoS Biol2020
33278375Successive epidemic waves of cholera in South Sudan between 2014 and 2017: a descriptive epidemiological study.Lancet Planet Health2020
30718881Capturing sequence diversity in metagenomes with comprehensive and scalable probe design.Nat Biotechnol2019
30332564Genomic Analysis of Lassa Virus during an Increase in Cases in Nigeria in 2018.N Engl J Med2018
28582513Evidence of Ebola Virus Replication and High Concentration in Semen of a Patient During Recovery.Clin Infect Dis2017
28405027Virus genomes reveal factors that spread and sustained the Ebola epidemic.Nature2017
28538734Zika virus evolution and spread in the Americas.Nature2017
28538723Genomic epidemiology reveals multiple introductions of Zika virus into the United States.Nature2017
27377746Ebola Virus Epidemiology and Evolution in Nigeria.J Infect Dis2016
27501264Genomic Analysis of Viral Outbreaks.Annu Rev Virol2016
25604787Evaluation of the potential impact of Ebola virus genomic drift on the efficacy of sequence-based candidate therapeutics.mBio2015
26091036Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone.Cell2015
25214632Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak.Science2014
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Collaborators

Pardis C Sabeti
Harvard University
Co-authored papers 13
Daniel J Park
Broad Institute of MIT and Harvard
Co-authored papers 10
Stephen F Schaffner
Broad Institute of Massachusetts Institute of Technology (MIT) and Harvard
Co-authored papers 9
Adrianne Gladden-Young
Co-authored papers 8
Robert F Garry
Tulane University School of Medicine
Co-authored papers 6
Andreas Gnirke
The Center for Genome Architecture, Baylor College of Medicine
Co-authored papers 6
Karthik Gangavarapu
the Scripps Research Institute
Co-authored papers 5
Refugio Robles-Sikisaka
The Scripps Research Institute
Co-authored papers 5
Andrew Rambaut
Institute of Ecology and Evolution, University of Edinburgh
Co-authored papers 5
Nathan D Grubaugh
Yale School of Public Health
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Jens H Kuhn
National Institute of Allergy and Infectious Diseases, National Institutes of Health
Co-authored papers 3
Mark Zeller
Rega Institute, University of Leuven
Co-authored papers 3
Glenn Oliveira
Faculdade de Medicina
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Srividya Ramakrishnan
Johns Hopkins University
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Laura Nicholson
Scripps Clinic/Scripps Green Hospital
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Nathaniel L Matteson
The Scripps Research Institute
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Edyth Parker
The Scripps Research Institute
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Smruthi Karthikeyan
California Institute of Technology
Co-authored papers 2
Chad Nusbaum
Co-authored papers 2
Ian McHardy
University of California, Davis Center for Valley Fever
Co-authored papers 2
Adam Buckley
Imperial College London Diabetes Centre
Co-authored papers 2
Niema Moshiri
Bonita Vista High School, University of California San Diego, University of California, San Diego
Co-authored papers 2
Edward C Holmes
Sydney Institute for Infectious Diseases, The University of Sydney
Co-authored papers 2
David T Pride
University of California San Diego
Co-authored papers 2
Stephen F Kingsmore
Rady Children's Institute for Genomic Medicine
Co-authored papers 2
Kathleen M Fisch
Center for Computational Biology and Bioinformatics, University of California
Co-authored papers 2
Angela L Scioscia
University of California San Diego
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David Dimmock
Rady Children's Institute for Genomic Medicine
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Alison Sanders
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