Author details

Full Name

Alexey Gurevich

Affiliation

ORCID

Career Start Year

2012

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37194696	WebQUAST: online evaluation of genome assemblies.		2023
37452020	HypoRiPPAtlas as an Atlas of hypothetical natural products for mass spectrometry database search.	Nat Commun	2023
36712343	NPOmix: A machine learning classifier to connect mass spectrometry fragmentation data to biosynthetic gene clusters.	PNAS Nexus	2022
36005578	NPvis: An Interactive Visualizer of Peptidic Natural Product-MS/MS Matches.	Metabolites	2022
34677408	Nerpa: A Tool for Discovering Biosynthetic Gene Clusters of Bacterial Nonribosomal Peptides.	Metabolites	2021
34238936	Publisher Correction: Integrating genomics and metabolomics for scalable non-ribosomal peptide discovery.	Nat Commun	2021
34050176	Integrating genomics and metabolomics for scalable non-ribosomal peptide discovery.	Nat Commun	2021
34140479	MolDiscovery: learning mass spectrometry fragmentation of small molecules.	Nature Communications	2021
33649565	Tutorial: assessing metagenomics software with the CAMI benchmarking toolkit.	Nat Protoc	2021
33418911	A Multi-Omics Characterization of the Natural Product Potential of Tropical Filamentous Marine Cyanobacteria.	Mar Drugs	2021
32657355	TandemTools: mapping long reads and assessing/improving assembly quality in extra-long tandem repeats.	Bioinformatics	2020
31864964	De Novo Peptide Sequencing Reveals Many Cyclopeptides in the Human Gut and Other Environments.	Cell Syst	2020
33020656	metaFlye: scalable long-read metagenome assembly using repeat graphs.	Nat Methods	2020
32839597	Feature-based molecular networking in the GNPS analysis environment.	Nat Methods	2020
31510666	NPS: scoring and evaluating the statistical significance of peptidic natural product-spectrum matches.		2019
31629686	MetaMiner: A Scalable Peptidogenomics Approach for Discovery of Ribosomal Peptide Natural Products with Blind Modifications from Microbial Communities.	Cell Syst	2019
29358742	Increased diversity of peptidic natural products revealed by modification-tolerant database search of mass spectra.	Nat Microbiol	2018
29949969	Versatile genome assembly evaluation with QUAST-LG.		2018
30279420	Dereplication of microbial metabolites through database search of mass spectra.	Nat Commun	2018
27820803	Dereplication of peptidic natural products through database search of mass spectra.	Nat Chem Biol	2017
28761934	Metabolic Fingerprints from the Human Oral Microbiome Reveal a Vast Knowledge Gap of Secreted Small Peptidic Molecules.	mSystems	2017
28967888	Critical Assessment of Metagenome Interpretation-a benchmark of metagenomics software.	Nat Methods	2017
28028548	Spatial Molecular Architecture of the Microbial Community of a <i>Peltigera</i> Lichen.	mSystems	2016
27378299	Icarus: visualizer for de novo assembly evaluation.		2016
26614127	MetaQUAST: evaluation of metagenome assemblies.		2016
26040456	Assembling short reads from jumping libraries with large insert sizes.	Bioinformatics	2015
24931996	ExSPAnder: a universal repeat resolver for DNA fragment assembly.	Bioinformatics	2014
23422339	QUAST: quality assessment tool for genome assemblies.		2013
24093227	Assembling single-cell genomes and mini-metagenomes from chimeric MDA products.	J Comput Biol	2013
22506599	SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.	J Comput Biol	2012