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Author Details

Adrien S J Melquiond
Oncode Institute & Hubrecht Institute-KNAW and University Medical Center Utrecht
2005
26
19
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
34099699Robust detection of translocations in lymphoma FFPE samples using targeted locus capture-based sequencing.Nat Commun2021
34099699Robust detection of translocations in lymphoma FFPE samples using targeted locus capture-based sequencing.Nat Commun2021
31886559An overview of data-driven HADDOCK strategies in CAPRI rounds 38-45.Proteins2020
31886559An overview of data-driven HADDOCK strategies in CAPRI rounds 38-45.Proteins2020
31612567Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment.Proteins2019
31612567Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment.Proteins2019
28831657Performance of HADDOCK and a simple contact-based protein-ligand binding affinity predictor in the D3R Grand Challenge 2.J Comput Aided Mol Des2018
28831657Performance of HADDOCK and a simple contact-based protein-ligand binding affinity predictor in the D3R Grand Challenge 2.J Comput Aided Mol Des2018
27802573Sense and simplicity in HADDOCK scoring: Lessons from CASP-CAPRI round 1.Proteins2017
28730688Sense and Simplicity in HADDOCK Scoring: Lessons from CASP-CAPRI (page 418).Proteins2017
27802573Sense and simplicity in HADDOCK scoring: Lessons from CASP-CAPRI round 1.Proteins2017
28730688Sense and Simplicity in HADDOCK Scoring: Lessons from CASP-CAPRI (page 418).Proteins2017
26751257Molecular dynamics characterization of the conformational landscape of small peptides: A series of hands-on collaborative practical sessions for undergraduate students.Biochem Mol Biol Educ2016
26751257Molecular dynamics characterization of the conformational landscape of small peptides: A series of hands-on collaborative practical sessions for undergraduate students.Biochem Mol Biol Educ2016
27381023Enhancers reside in a unique epigenetic environment during early zebrafish development.Genome Biol2016
27122118Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment.Proteins2016
26410586The HADDOCK2.2 Web Server: User-Friendly Integrative Modeling of Biomolecular Complexes.J Mol Biol2016
27630991dMM-PBSA: A New HADDOCK Scoring Function for Protein-Peptide Docking.Front Mol Biosci2016
26410586The HADDOCK2.2 Web Server: User-Friendly Integrative Modeling of Biomolecular Complexes.J Mol Biol2016
27630991dMM-PBSA: A New HADDOCK Scoring Function for Protein-Peptide Docking.Front Mol Biosci2016
27122118Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment.Proteins2016
27381023Enhancers reside in a unique epigenetic environment during early zebrafish development.Genome Biol2016
25555727Information-driven modeling of protein-peptide complexes.Methods Mol Biol2015
25914056Integrative Modeling of Biomolecular Complexes: HADDOCKing with Cryo-Electron Microscopy Data.Structure2015
25555727Information-driven modeling of protein-peptide complexes.Methods Mol Biol2015
25914056Integrative Modeling of Biomolecular Complexes: HADDOCKing with Cryo-Electron Microscopy Data.Structure2015
24155158Blind prediction of interfacial water positions in CAPRI.Proteins2014
24155158Blind prediction of interfacial water positions in CAPRI.Proteins2014
24474762Insight into cyanobacterial circadian timing from structural details of the KaiB-KaiC interaction.Proc Natl Acad Sci U S A2014
24474762Insight into cyanobacterial circadian timing from structural details of the KaiB-KaiC interaction.Proc Natl Acad Sci U S A2014
23516555A unified conformational selection and induced fit approach to protein-peptide docking.PLoS One2013
23913867Defining the limits of homology modeling in information-driven protein docking.Proteins2013
23516555A unified conformational selection and induced fit approach to protein-peptide docking.PLoS One2013
23913867Defining the limits of homology modeling in information-driven protein docking.Proteins2013
22489062Clustering biomolecular complexes by residue contacts similarity.Proteins2012
22828329Supramolecular structure of membrane-associated polypeptides by combining solid-state NMR and molecular dynamics simulations.Biophys J2012
22489062Clustering biomolecular complexes by residue contacts similarity.Proteins2012
23133359Dynamic control of selectivity in the ubiquitination pathway revealed by an ASP to GLU substitution in an intra-molecular salt-bridge network.PLoS Comput Biol2012
23133359Dynamic control of selectivity in the ubiquitination pathway revealed by an ASP to GLU substitution in an intra-molecular salt-bridge network.PLoS Comput Biol2012
22828329Supramolecular structure of membrane-associated polypeptides by combining solid-state NMR and molecular dynamics simulations.Biophys J2012
20305088Building macromolecular assemblies by information-driven docking: introducing the HADDOCK multibody docking server.Mol Cell Proteomics2010
20718048Strengths and weaknesses of data-driven docking in critical assessment of prediction of interactions.Proteins2010
20305088Building macromolecular assemblies by information-driven docking: introducing the HADDOCK multibody docking server.Mol Cell Proteomics2010
20718048Strengths and weaknesses of data-driven docking in critical assessment of prediction of interactions.Proteins2010
18537541Role of the region 23-28 in Abeta fibril formation: insights from simulations of the monomers and dimers of Alzheimer's peptides Abeta40 and Abeta42.Curr Alzheimer Res2008
18537541Role of the region 23-28 in Abeta fibril formation: insights from simulations of the monomers and dimers of Alzheimer's peptides Abeta40 and Abeta42.Curr Alzheimer Res2008
17313247Probing amyloid fibril formation of the NFGAIL peptide by computer simulations.J Chem Phys2007
17313247Probing amyloid fibril formation of the NFGAIL peptide by computer simulations.J Chem Phys2007
16894607Structures of soluble amyloid oligomers from computer simulations.Proteins2006
16894607Structures of soluble amyloid oligomers from computer simulations.Proteins2006
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Collaborators

Alexandre M J J Bonvin
Bijvoet Center for Biomolecular Research, Utrecht University
Co-authored papers 20
Panagiotis L Kastritis
Interdisciplinary Research Center HALOmem, Martin Luther University Halle-Wittenberg
Co-authored papers 10
Mikael Trellet
Co-authored papers 10
Ezgi Karaca
Dokuz Eylul University
Co-authored papers 9
Jo??o P G L M Rodrigues
Stanford University
Co-authored papers 9
Li C Xue
Utrecht University
Co-authored papers 6
Marc van Dijk
Co-authored papers 6
Gydo C P van Zundert
Utrecht University
Co-authored papers 6
Cunliang Geng
Co-authored papers 5
Anna Vangone
Roche Pharma Research and Early Development
Co-authored papers 5
Christophe Schmitz
Co-authored papers 4
Shoshana J Wodak
VIB-VUB Center for Structural Biology
Co-authored papers 3
Paul A Bates
The Francis Crick Institute
Co-authored papers 3
Sandor Vajda
Boston University
Co-authored papers 3
Juan Fern??ndez-Recio
Instituto de Ciencias de la Vid y del Vino (ICVV-CSIC)
Co-authored papers 3
Chaok Seok
Seoul National University
Co-authored papers 3
Marc F Lensink
University Lille, CNRS
Co-authored papers 3
Jörg Schaarschmidt
Co-authored papers 3
Jorge Roel-Touris
Co-authored papers 3
Sheng-You Huang
Huazhong University of Science and Technology
Co-authored papers 3
Brian G Pierce
University of Maryland Institute for Bioscience and Biotechnology Research
Co-authored papers 3
Koen Visscher
Inscopix Inc.
Co-authored papers 3
Mehdi Nellen
Utrecht University
Co-authored papers 3
Thom Vreven
Visterra Inc.
Co-authored papers 3
Xiaoqin Zou
Dalton Cardiovascular Research Center, University of Missouri
Co-authored papers 3
Ilya A Vakser
The University of Kansas
Co-authored papers 3
Brian Jim??nez-Garc??a
Utrecht University
Co-authored papers 3
Iain H Moal
GSK Medicines Research Centre
Co-authored papers 3
Petras J Kundrotas
The University of Kansas
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Zhiping Weng
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