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Author Details

Adam L MacLean
University of Southern California
2013
38
14
PMIDPaper TitleJournal TitlePublished Year
37905011Gastrulation-stage gene expression in <i>Nipbl</i> <sup>+/-</sup> mouse embryos foreshadows the development of syndromic birth defects.bioRxiv2024
36635562Voices carry.Nat Chem Biol2023
37673062Direct androgen receptor control of sexually dimorphic gene expression in the mammalian kidney.Dev Cell2023
37024649Julia for biologists.Nat Methods2023
37120675Author Correction: Julia for biologists.Nat Methods2023
37418531Single-cell and spatial transcriptomics identify a macrophage population associated with skeletal muscle fibrosis.Sci Adv2023
37282589Single-cell Ca<sup>2+</sup> parameter inference reveals how transcriptional states inform dynamic cell responses.J R Soc Interface2023
37205355Direct androgen receptor regulation of sexually dimorphic gene expression in the mammalian kidney.bioRxiv2023
37131694Single-cell and spatial transcriptomics identify a macrophage population associated with skeletal muscle fibrosis.bioRxiv2023
37131596Gene regulatory network inference with popInfer reveals dynamic regulation of hematopoietic stem cell quiescence upon diet restriction and aging.bioRxiv2023
36848523Myeloid-Derived Suppressor-Cell Dynamics Control Outcomes in the Metastatic Niche.Cancer Immunol Res2023
35231105Age-dependent effects of Igf2bp2 on gene regulation, function, and aging of hematopoietic stem cells in mice.Blood2022
35497492Profiling intermediate cell states in high resolution.Cell Rep Methods2022
35076276Correction for Rando et al., "Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through Analysis of Viral Genomics and Structure".mSystems2022
33974008RVAgene: generative modeling of gene expression time series data.Bioinformatics2021
34936864Single-cell transcriptomic analysis of zebrafish cranial neural crest reveals spatiotemporal regulation of lineage decisions during development.Cell Rep2021
34935903A single-cell resolved cell-cell communication model explains lineage commitment in hematopoiesis.Development2021
34408236Modeling the effects of EMT-immune dynamics on carcinoma disease progression.Commun Biol2021
34283805The diverse landscape of modeling in single-cell biology.Phys Biol2021
32843640Single cell transcriptomics of human epidermis identifies basal stem cell transition states.Nat Commun2020
30561090Transcriptomics reveals complex kinetics of dorsal-ventral patterning gene expression in the mandibular arch.Genesis2019
30923815Cell lineage and communication network inference via optimization for single-cell transcriptomics.Nucleic Acids Res2019
30413481An Ovol2-Zeb1 transcriptional circuit regulates epithelial directional migration and proliferation.EMBO Rep2019
29415263scEpath: energy landscape-based inference of transition probabilities and cellular trajectories from single-cell transcriptomic data.Bioinformatics2018
30450444Exploring intermediate cell states through the lens of single cells.Curr Opin Syst Biol2018
29392399Bayesian inference of agent-based models: a tool for studying kidney branching morphogenesis.J Math Biol2018
27671750Concise Review: Stem Cell Population Biology: Insights from Hematopoiesis.Stem Cells2017
28951462Multiscale Modeling of Inflammation-Induced Tumorigenesis Reveals Competing Oncogenic and Oncoprotective Roles for Inflammation.Cancer Res2017
28511648A mathematical model of mechanotransduction reveals how mechanical memory regulates mesenchymal stem cell fate decisions.BMC Syst Biol2017
28833970Single Cell Phenotyping Reveals Heterogeneity Among Hematopoietic Stem Cells Following Infection.Stem Cells2017
27335321Systematic tracking of altered haematopoiesis during sporozoite-mediated malaria development reveals multiple response points.Open Biol2016
26677193Mathematical and Statistical Techniques for Systems Medicine: The Wnt Signaling Pathway as a Case Study.Methods Mol Biol2016
27130539Feedback mechanisms control coexistence in a stem cell model of acute myeloid leukaemia.J Theor Biol2016
25730853Parameter-free methods distinguish Wnt pathway models and guide design of experiments.Proc Natl Acad Sci U S A2015
26453624Cellular population dynamics control the robustness of the stem cell niche.Biol Open2015
24567385The ecology in the hematopoietic stem cell niche determines the clinical outcome in chronic myeloid leukemia.Proc Natl Acad Sci U S A2014
28548077Epithelial-Mesenchymal Transition in Metastatic Cancer Cell Populations Affects Tumor Dormancy in a Simple Mathematical Model.Biomedicines2014
23349436Population dynamics of normal and leukaemia stem cells in the haematopoietic stem cell niche show distinct regimes where leukaemia will be controlled.J R Soc Interface2013
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Collaborators

Helen M Byrne
Co-authored papers 3
Ingileif B Hallgrímsdóttir
Co-authored papers 2
Lior Pachter
Co-authored papers 2
Quy Nguyen
University of California irvine
Co-authored papers 2
Marouen Ben Guebila
Harvard School of Public Health
Co-authored papers 1
Yanjun Qi
University of Virginiagrid.27755.32
Co-authored papers 1
YoSon Park
University of Pennsylvania - Perelman School of Medicine
Co-authored papers 1
Nils Wellhausen
University of Pennsylvania
Co-authored papers 1
Simina M Boca
Georgetown University Medical Center
Co-authored papers 1
Tiago Lubiana
School of Pharmaceutical Sciences, University of Sao Paulo
Co-authored papers 1
David Mai
University of Pennsylvania
Co-authored papers 1
Junhyong Kim
Co-authored papers 1
Joel D Boerckel
University of Pennsylvania School of Medicine
Co-authored papers 1
Halie M Rando
University of Pennsylvania
Co-authored papers 1
Ronan Lordan
Perelman School of Medicine, University of Pennsylvania
Co-authored papers 1
John P Barton
University of California riverside
Co-authored papers 1
Rishi R Goel
Institute for Immunology, University of Pennsylvania Perelman School of Medicine
Co-authored papers 1
Christian Brueffer
Lund University
Co-authored papers 1
Casey S Greene
Co-authored papers 1
Anthony Gitter
University of Wisconsin-Madison
Co-authored papers 1
Vikas Bansal
German Center for Neurodegenerative Diseases
Co-authored papers 1
James Brian Byrd
University of Michigan School of Medicine ann arbor
Co-authored papers 1
Casey S Greene
Dartmouth College Geisel School of Medicine, Princeton University, University of Colorado Anschutz Medical Campus, University of Pennsylvania Perelman School of Medicine
Co-authored papers 1
John J Dziak
Institute for Health Research and Policy, University of Illinois Chicago
Co-authored papers 1
Jinhui Wang
Perelman School of Medicine, University of Pennsylvania
Co-authored papers 1
Bernhard O Boehm
Co-authored papers 1
Elizabeth Sell
Perelman School of Medicine, University of Pennsylvania
Co-authored papers 1
Lucy D'Agostino McGowan
Wake Forest University
Co-authored papers 1
Stephen Capone
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Sergey Knyazev
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