Author details

Full Name

David C Schwartz

Affiliation

University of Wisconsin-Madison

ORCID

Career Start Year

1983

Papers

132

H Index

Expertise

CM4AI Collaborator

Christopher Churas (CM4AI)

PMID	Paper Title	Journal Title	Published Year
37753479	A database of restriction maps to expand the utility of bacterial artificial chromosomes.	GigaByte	2023
35578730	Trench field-effect transistors integrated in a microfluidic channel and design considerations for charge detection.	Appl Phys Lett	2022
32005944	The genome of opportunistic fungal pathogen Fusarium oxysporum carries a unique set of lineage-specific chromosomes.	Commun Biol	2020
30744406	A simple dialysis device for large DNA molecules.	Biotechniques	2019
31409480	Biophysics and the Genomic Sciences.	Biophys J	2019
30403478	Microscale Objects via Restructuring of Large, Double-Stranded DNA Molecules.	ACS Appl Mater Interfaces	2018
30044624	Discrete and Continuum Models for the Salt in Crowded Environments of Suspended Charged Particles.	J Chem Theory Comput	2018
26913498	A gapless genome sequence of the fungus Botrytis cinerea.	Mol Plant Pathol	2017
29203667	Electrostatic confinement and manipulation of DNA molecules for genome analysis.	Proc Natl Acad Sci U S A	2017
29078285	In silico evidence for sequence-dependent nucleosome sliding.	Proc Natl Acad Sci U S A	2017
28851275	Gapless genome assembly of Colletotrichum higginsianum reveals chromosome structure and association of transposable elements with secondary metabolite gene clusters.	BMC Genomics	2017
27540062	Genome Sequence and Annotation of Colletotrichum higginsianum, a Causal Agent of Crucifer Anthracnose Disease.	Genome Announc	2016
26264666	DNA binding fluorescent proteins for the direct visualization of large DNA molecules.	Nucleic Acids Res	2016
26637292	Maligner: a fast ordered restriction map aligner.	Bioinformatics	2016
27725965	Tension-Dependent Free Energies of Nucleosome Unwrapping.	ACS Cent Sci	2016
27453446	Allele-Specific Quantification of Structural Variations in Cancer Genomes.	Cell Syst	2016
26056298	Single-molecule analysis reveals widespread structural variation in multiple myeloma.	Proc Natl Acad Sci U S A	2015
26314885	A clone-free, single molecule map of the domestic cow (Bos taurus) genome.	BMC Genomics	2015
26641089	Comparative Genomic Analyses of the Human NPHP1 Locus Reveal Complex Genomic Architecture and Its Regional Evolution in Primates.	PLoS Genet	2015
26046933	Chromosome-level genome map provides insights into diverse defense mechanisms in the medicinal fungus Ganoderma sinense.	Sci Rep	2015
24767513	An improved genome release (version Mt4.0) for the model legume Medicago truncatula.	BMC Genomics	2014
25061512	High-coverage sequencing and annotated assemblies of the budgerigar genome.	Gigascience	2014
23316438	Comparative genomics of a plant-pathogenic fungus, Pyrenophora tritici-repentis, reveals transduplication and the impact of repeat elements on pathogenicity and population divergence.	G3 (Bethesda)	2013
24683272	Presentation of large DNA molecules for analysis as nanoconfined dumbbells.	Macromolecules	2013
24280374	Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data.	Rice (N Y)	2013
23885787	Discovery of structural alterations in solid tumor oligodendroglioma by single molecule analysis.	BMC Genomics	2013
23870653	Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species.	Gigascience	2013
23738321	Comparative genomics of cryptosporidium.	Int J Genomics	2013
23590730	Improving mammalian genome scaffolding using large insert mate-pair next-generation sequencing.	BMC Genomics	2013
22409516	Genome sequencing of ovine isolates of Mycobacterium avium subspecies paratuberculosis offers insights into host association.	BMC Genomics	2012
22735441	Genome sequence of the model medicinal mushroom Ganoderma lucidum.	Nat Commun	2012
22856673	AGORA: Assembly Guided by Optical Restriction Alignment.	BMC Bioinformatics	2012
22885923	Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses.	Nat Genet	2012
22506568	Statistical significance of optical map alignments.	J Comput Biol	2012
21431167	Nanochannel confinement: DNA stretch approaching full contour length.	Lab Chip	2011
22089132	The Medicago genome provides insight into the evolution of rhizobial symbioses.	Nature	2011
21886856	Complete genome sequence of Rhodospirillum rubrum type strain (S1).	Stand Genomic Sci	2011
19747545	Engineering BspQI nicking enzymes and application of N.BspQI in DNA labeling and production of single-strand DNA.	Protein Expr Purif	2010
22121326	New Generations: Sequencing Machines and Their Computational Challenges.	J Comput Sci Technol	2010
20729854	A large and complex structural polymorphism at 16p12.1 underlies microdeletion disease risk.	Nat Genet	2010
20534489	High-resolution human genome structure by single-molecule analysis.	Proc Natl Acad Sci U S A	2010
20237561	Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium.	Nature	2010
19254530	A mesoscale model of DNA and its renaturation.	Biophys J	2009
19898456	The challenges of sequencing by synthesis.	Nat Biotechnol	2009
19936062	A single molecule scaffold for the maize genome.	PLoS Genet	2009
19936061	The physical and genetic framework of the maize B73 genome.	PLoS Genet	2009
19936048	Detailed analysis of a contiguous 22-Mb region of the maize genome.	PLoS Genet	2009
19965430	The B73 maize genome: complexity, diversity, and dynamics.	Science	2009
19636466	Elongation and migration of single DNA molecules in microchannels using oscillatory shear flows.	Lab Chip	2009
19815517	Uncovering pathways in DNA oligonucleotide hybridization via transition state analysis.	Proc Natl Acad Sci U S A	2009

1 - 50 of 132

George M Church

Wyss Institute for Biologically Inspired Engineering, Harvard University

Career Start Year 2018

Number of shared co-authors 2

Nozomu Yachie

The University of British Columbia

Career Start Year 2006

Number of shared co-authors 0

Huyen Dinh

Institute of Advanced Energy, Kyoto University

Career Start Year 2005

Number of shared co-authors 52

Gang Fang

Icahn School of Medicine at Mount Sinai

Career Start Year 2005

Number of shared co-authors 10

Jeffrey R Moffitt

Harvard Medical School

Career Start Year 2004

Number of shared co-authors 2

Brian M Turczyk

Wyss Institute for Biologically Inspired Engineering, Harvard University

Career Start Year 2000

Number of shared co-authors 1

Cynthia Andrews-Pfannkoch

Mayo Clinic

Career Start Year 2000

Number of shared co-authors 39

John Aach

Harvard Medical School

Career Start Year 2000

Number of shared co-authors 3

Ming Xiao

Drexel University

Career Start Year 1998

Number of shared co-authors 13

William J Greenleaf

Stanford University

Career Start Year 1998

Number of shared co-authors 3

Vincent Magrini

The Ohio State University

Career Start Year 1997

Number of shared co-authors 31

Stefano Lonardi

University of California Riverside

Career Start Year 1996

Number of shared co-authors 9

Stephen R Quake

Stanford University

Career Start Year 1994

Number of shared co-authors 7

Thomas D Willis

Adaptive Biotechnologies

Career Start Year 1993

Number of shared co-authors 12

Joakim Lundeberg

KTH Royal Institute of Technology

Career Start Year 1990

Number of shared co-authors 3

Mark S Chee

Medical Research Council Laboratory of Molecular Biology

Career Start Year 1989

Number of shared co-authors 13

Mats Nilsson

Stockholm University

Career Start Year 1988

Number of shared co-authors 1

Eugene W Myers

Max Planck Institute of Molecular Cell Biology and Genetics

Career Start Year 1986

Number of shared co-authors 42

Andreas Gnirke

The Center for Genome Architecture, Baylor College of Medicine

Career Start Year 1986

Number of shared co-authors 28

Roger S Lasken

J. Craig Venter Institute

Career Start Year 1984

Number of shared co-authors 5

Paul A Kitts

National Center for Biotechnology Information, National Institutes of Health

Career Start Year 1982

Number of shared co-authors 49

George M Weinstock

The Genome Center at Washington University, Washington University School of Medicine

Career Start Year 1979

Number of shared co-authors 99

Carlos Bustamante

University of California berkeley

Career Start Year 1979

Number of shared co-authors 0

Steven Henikoff

Fred Hutchinson Cancer Center

Career Start Year 1974

Number of shared co-authors 8

Thomas R Gingeras

Stanley Institute for Cognitive Genomics

Career Start Year 1974

Number of shared co-authors 35

Norma Neff

Stanford University

Career Start Year 1974

Number of shared co-authors 3

Erica Sodergren

The Genome Institute at Washington University

Career Start Year 1972

Number of shared co-authors 81

William M Gelbart

University of California Los Angeles

Career Start Year 1970

Number of shared co-authors 40

Ronald W Davis

Stanford University

Career Start Year 1968

Number of shared co-authors 50

Lloyd M Smith

University of Wisconsin-Madison College of Letters and Sciences

Career Start Year 1964

Number of shared co-authors 2

row(s) 1 - 30 of 30

Shiguo Zhou

Sage Science Inc.

Co-authored papers 46

Steve Goldstein

University of Wisconsin-Madison

Co-authored papers 16

Juan J de Pablo

University of Chicago

Co-authored papers 16

Dan Forrest

Co-authored papers 14

Thomas Anantharaman

Courant Institute, New York University

Co-authored papers 13

Konstantinos Potamousis

University of Wisconsin-Madison

Co-authored papers 12

Rod Runnheim

Co-authored papers 11

Christopher Churas (CM4AI)

University of California San Diego

Co-authored papers 11

Michael Place

Center for Genomic Science Innovation, University of Wisconsin-Madison

Co-authored papers 9

Michael Bechner

University of Wisconsin-Madison

Co-authored papers 9

Christopher E Aston

Co-authored papers 9

Michael S Waterman

Biocomplexity Institute and Initiative

Co-authored papers 8

Frederick R Blattner

Scarab Genomics LLC

Co-authored papers 8

Valerie Burland

University of Wisconsin

Co-authored papers 8

Eileen T Dimalanta

New England Biolabs Inc.

Co-authored papers 7

Casey Lamers

Co-authored papers 6

Michael D Graham

University of Wisconsin-Madison

Co-authored papers 6

Tina Graves

McDonnell Genome Institute, Washington University

Co-authored papers 6

Nicole T Perna

Center for Genomic Science Innovation, University of Wisconsin-Madison

Co-authored papers 6

Alex Lim

University of Wisconsin-Madison

Co-authored papers 5

Richard K Wilson

The Ohio State University

Co-authored papers 5

Wen Deng

University of Wisconsin

Co-authored papers 5

Anton Valouev

Keck School of Medicine, University of Southern California

Co-authored papers 5

Evan E Eichler

University of Washington

Co-authored papers 4

Deepayan Sarkar

All India Institute of Medical Sciences

Co-authored papers 4

Louise Pape

University of Wisconsin-Madison

Co-authored papers 4

Erika Kvikstad

University of Oxford

Co-authored papers 4

Brian Teague

Massachusetts Institute of Technology

Co-authored papers 4

Zhongwu Lai

Oncology R&D

Co-authored papers 4

Michael A Newton

University of Wisconsin School of Medicine and Public Health

Co-authored papers 4

1 - 30

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