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Author Details

Alistair R R Forrest
RIKEN Center for Integrative Medical Sciences
1994
147
56
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36700121Characterization of the humanized FRG mouse model and development of an AAV-LK03 variant with improved liver lobular biodistribution.Mol Ther Methods Clin Dev2023
36700121Characterization of the humanized FRG mouse model and development of an AAV-LK03 variant with improved liver lobular biodistribution.Mol Ther Methods Clin Dev2023
36318921Human prefrontal cortex gene regulatory dynamics from gestation to adulthood at single-cell resolution.Cell2022
35961773Deep sequencing of short capped RNAs reveals novel families of noncoding RNAs.Genome Res2022
35749574MaxHiC: A robust background correction model to identify biologically relevant chromatin interactions in Hi-C and capture Hi-C experiments.PLoS Comput Biol2022
35986006Temporally restricted activation of IFNβ signaling underlies response to immune checkpoint therapy in mice.Nat Commun2022
36318921Human prefrontal cortex gene regulatory dynamics from gestation to adulthood at single-cell resolution.Cell2022
35749574MaxHiC: A robust background correction model to identify biologically relevant chromatin interactions in Hi-C and capture Hi-C experiments.PLoS Comput Biol2022
35961773Deep sequencing of short capped RNAs reveals novel families of noncoding RNAs.Genome Res2022
35986006Temporally restricted activation of IFNβ signaling underlies response to immune checkpoint therapy in mice.Nat Commun2022
34551826Improved CRISPR/Cas9 gene editing in primary human myoblasts using low confluency cultures on Matrigel.Skelet Muscle2021
34551826Improved CRISPR/Cas9 gene editing in primary human myoblasts using low confluency cultures on Matrigel.Skelet Muscle2021
34470851Intra- and intertumoral heterogeneity of liver metastases in a patient with uveal melanoma revealed by single-cell RNA sequencing.Cold Spring Harb Mol Case Stud2021
34470851Intra- and intertumoral heterogeneity of liver metastases in a patient with uveal melanoma revealed by single-cell RNA sequencing.Cold Spring Harb Mol Case Stud2021
32161175Comprehensive Characterization of Transcriptional Activity during Influenza A Virus Infection Reveals Biases in Cap-Snatching of Host RNA Sequences.J Virol2020
31992766CANCERSIGN: a user-friendly and robust tool for identification and classification of mutational signatures and patterns in cancer genomes.Sci Rep2020
32161175Comprehensive Characterization of Transcriptional Activity during Influenza A Virus Infection Reveals Biases in Cap-Snatching of Host RNA Sequences.J Virol2020
32487174Systematic assessment of tissue dissociation and storage biases in single-cell and single-nucleus RNA-seq workflows.Genome Biol2020
32641116Human genetics and genomics meetings going virtual: practical lessons learned from two international meetings in early 2020.Hum Genomics2020
33024107Predicting cell-to-cell communication networks using NATMI.Nat Commun2020
33072063Molecular Insights Into Regulatory T-Cell Adaptation to Self, Environment, and Host Tissues: Plasticity or Loss of Function in Autoimmune Disease.Front Immunol2020
32790115Stromal cell diversity associated with immune evasion in human triple-negative breast cancer.EMBO J2020
33113368Brain-Enriched Coding and Long Non-coding RNA Genes Are Overrepresented in Recurrent Neurodevelopmental Disorder CNVs.Cell Rep2020
32718981Comparative transcriptomics of primary cells in vertebrates.Genome Res2020
31992766CANCERSIGN: a user-friendly and robust tool for identification and classification of mutational signatures and patterns in cancer genomes.Sci Rep2020
33113368Brain-Enriched Coding and Long Non-coding RNA Genes Are Overrepresented in Recurrent Neurodevelopmental Disorder CNVs.Cell Rep2020
33072063Molecular Insights Into Regulatory T-Cell Adaptation to Self, Environment, and Host Tissues: Plasticity or Loss of Function in Autoimmune Disease.Front Immunol2020
32718981Comparative transcriptomics of primary cells in vertebrates.Genome Res2020
32790115Stromal cell diversity associated with immune evasion in human triple-negative breast cancer.EMBO J2020
33024107Predicting cell-to-cell communication networks using NATMI.Nat Commun2020
32641116Human genetics and genomics meetings going virtual: practical lessons learned from two international meetings in early 2020.Hum Genomics2020
32487174Systematic assessment of tissue dissociation and storage biases in single-cell and single-nucleus RNA-seq workflows.Genome Biol2020
30610612Antisense Transcription in Loci Associated to Hereditary Neurodegenerative Diseases.Mol Neurobiol2019
30610612Antisense Transcription in Loci Associated to Hereditary Neurodegenerative Diseases.Mol Neurobiol2019
31028376scMatch: a single-cell gene expression profile annotation tool using reference datasets.Bioinformatics2019
30918256Myoglobinopathy is an adult-onset autosomal dominant myopathy with characteristic sarcoplasmic inclusions.Nat Commun2019
31467181Expression Levels of Therapeutic Targets as Indicators of Sensitivity to Targeted Therapeutics.Mol Cancer Ther2019
31533632Identification of novel cerebellar developmental transcriptional regulators with motif activity analysis.BMC Genomics2019
31533632Identification of novel cerebellar developmental transcriptional regulators with motif activity analysis.BMC Genomics2019
31467181Expression Levels of Therapeutic Targets as Indicators of Sensitivity to Targeted Therapeutics.Mol Cancer Ther2019
30918256Myoglobinopathy is an adult-onset autosomal dominant myopathy with characteristic sarcoplasmic inclusions.Nat Commun2019
31028376scMatch: a single-cell gene expression profile annotation tool using reference datasets.Bioinformatics2019
29325522Correction to: Relatively frequent switching of transcription start sites during cerebellar development.BMC Genomics2018
30407537Integration of genetics and miRNA-target gene network identified disease biology implicated in tissue specificity.Nucleic Acids Res2018
30215711Bi-allelic mutations in MYL1 cause a severe congenital myopathy.Hum Mol Genet2018
30538238Author Correction: Transcription start site profiling of 15 anatomical regions of the Macaca mulatta central nervous system.Sci Data2018
30089658Conserved temporal ordering of promoter activation implicates common mechanisms governing the immediate early response across cell types and stimuli.Open Biol2018
29307116Discovery of Transcription Factors Novel to Mouse Cerebellar Granule Cell Development Through Laser-Capture Microdissection.Cerebellum2018
29712924Transcriptional landscape of Mycobacterium tuberculosis infection in macrophages.Sci Rep2018
29325522Correction to: Relatively frequent switching of transcription start sites during cerebellar development.BMC Genomics2018
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Collaborators

Yoshihide Hayashizaki
Center for Integrative Medical Sciences
Co-authored papers 86
Piero Carninci
RIKEN Center for Integrative Medical Sciences
Co-authored papers 84
Hideya Kawaji
RIKEN Center for Integrative Medical Sciences
Co-authored papers 76
Timo Lassmann
Telethon Kids Institute, University of Western Australia
Co-authored papers 63
Masayoshi Itoh
RIKEN Center for Integrative Medical Sciences
Co-authored papers 55
Carsten O Daub
International Institute of Molecular and Cell Biology in Warsaw
Co-authored papers 37
Harukazu Suzuki
RIKEN Center for Integrative Medical Sciences
Co-authored papers 34
Erik Arner
RIKEN Center for Integrative Medical Sciences (IMS)
Co-authored papers 28
Marina Lizio
Cerevance Ltd
Co-authored papers 27
David A Hume
Mater Research Institute-UQ, Translational Research Institute
Co-authored papers 26
Sean M Grimmond
The University of Melbourne
Co-authored papers 23
Jun Kawai
RIKEN Center for Integrative Medical Sciences
Co-authored papers 22
Takeya Kasukawa
RIKEN Center for Integrative Medical Sciences
Co-authored papers 20
Dave S B Hoon
Saint John's Cancer Institute at Saint John's Health Center
Co-authored papers 20
Jessica Severin
Center for Integrative Medical Sciences
Co-authored papers 20
Albin Sandelin
University of Copenhagen
Co-authored papers 19
Nicolas Bertin
University Bordeaux, CNRS
Co-authored papers 15
Mutsumi Kanamori-Katayama
Karolinska Institutet
Co-authored papers 15
Christine A Wells
The University of Melbourne
Co-authored papers 15
Robin Andersson
University of Copenhagen
Co-authored papers 14
Geoffrey J Faulkner
Mater Research Institute - University of Queensland
Co-authored papers 13
Michael Rehli
University Hospital Regensburg
Co-authored papers 13
Jayson Harshbarger
RIKEN Center for Integrative Medical Sciences
Co-authored papers 13
Imad Abugessaisa
RIKEN Center for Integrative Medical Sciences
Co-authored papers 12
Sayaka Nagao-Sato
Ochanomizu University
Co-authored papers 11
Chikatoshi Kai
Co-authored papers 11
Peter Heutink
German Center for Neurodegenerative Diseases (DZNE).
Co-authored papers 10
Jay W Shin
Genome Institute of Singapore (GIS)
Co-authored papers 10
Vladimir B Bajic
King Abdullah University of Science and Technology (KAUST)
Co-authored papers 10
Akira Hasegawa
RIKEN Center for Integrative Medical Sciences
Co-authored papers 10
Release 1.2