|
| 33305317 | HMPDACC: a Human Microbiome Project Multi-omic data resource. | Nucleic Acids Res | 2021 |
| 34616066 | A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex. | Nature | 2021 |
| 34772701 | Mutagenesis of human genomes by endogenous mobile elements on a population scale. | Genome Res | 2021 |
| 33119590 | Capture-based enrichment of Theileria parva DNA enables full genome assembly of first buffalo-derived strain and reveals exceptional intra-specific genetic diversity. | PLoS Negl Trop Dis | 2020 |
| 32103005 | A comprehensive non-redundant gene catalog reveals extensive within-community intraspecies diversity in the human vagina. | Nat Commun | 2020 |
| 31467106 | TwinBLAST: When Two Is Better than One. | Microbiol Resour Announc | 2019 |
| 29022944 | Erratum: Strains, functions and dynamics in the expanded Human Microbiome Project. | Nature | 2017 |
| 28449639 | CloVR-Comparative: automated, cloud-enabled comparative microbial genome sequence analysis pipeline. | BMC Genomics | 2017 |
| 28118849 | Distinguishing potential bacteria-tumor associations from contamination in a secondary data analysis of public cancer genome sequence data. | Microbiome | 2017 |
| 28967885 | Assessment of variation in microbial community amplicon sequencing by the Microbiome Quality Control (MBQC) project consortium. | Nat Biotechnol | 2017 |
| 28953883 | Strains, functions and dynamics in the expanded Human Microbiome Project. | Nature | 2017 |
| 27447865 | An integrated genomic and transcriptomic survey of mucormycosis-causing fungi. | Nat Commun | 2016 |
| 27752055 | Genome-wide diversity and gene expression profiling of Babesia microti isolates identify polymorphic genes that mediate host-pathogen interactions. | Sci Rep | 2016 |
| 25873374 | Functional dynamics of the gut microbiome in elderly people during probiotic consumption. | mBio | 2015 |
| 25075113 | Circleator: flexible circular visualization of genome-associated data with BioPerl and SVG. | Bioinformatics | 2014 |
| 25370488 | Genomic epidemiology of the Haitian cholera outbreak: a single introduction followed by rapid, extensive, and continued spread characterized the onset of the epidemic. | mBio | 2014 |
| 24356829 | Draft Genome Sequences of Human Pathogenic Fungus Geomyces pannorum Sensu Lato and Bat White Nose Syndrome Pathogen Geomyces (Pseudogymnoascus) destructans. | Genome Announc | 2013 |
| 22121156 | Using Sybil for interactive comparative genomics of microbes on the web. | Bioinformatics | 2012 |
| 22080559 | The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources. | Nucleic Acids Res | 2012 |
| 21974739 | New resources for functional analysis of omics data for the genus Aspergillus. | BMC Genomics | 2011 |
| 19773420 | The Aspergillus Genome Database, a curated comparative genomics resource for gene, protein and sequence information for the Aspergillus research community. | Nucleic Acids Res | 2010 |
| 20729833 | Draft genome sequence of the oilseed species Ricinus communis. | Nat Biotechnol | 2010 |
| 20489017 | A catalog of reference genomes from the human microbiome. | Science | 2010 |
| 20333227 | Continuing evolution of Burkholderia mallei through genome reduction and large-scale rearrangements. | Genome Biol Evol | 2010 |
| 20413634 | Ergatis: a web interface and scalable software system for bioinformatics workflows. | Bioinformatics | 2010 |
| 19843611 | Pathema: a clade-specific bioinformatics resource center for pathogen research. | Nucleic Acids Res | 2010 |
| 19036787 | The HuRef Browser: a web resource for individual human genomics. | Nucleic Acids Res | 2009 |
| 18404212 | Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus. | PLoS Genet | 2008 |
| 19116010 | Comparative genomics of mutualistic viruses of Glyptapanteles parasitic wasps. | Genome Biol | 2008 |
| 18787699 | Sub-telomere directed gene expression during initiation of invasive aspergillosis. | PLoS Pathog | 2008 |
| 18843361 | Comparative genomics of the neglected human malaria parasite Plasmodium vivax. | Nature | 2008 |
| 19061522 | IDEA: Interactive Display for Evolutionary Analyses. | BMC Bioinformatics | 2008 |
| 18676672 | The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates. | J Bacteriol | 2008 |
| 17510324 | Genome sequence of Aedes aegypti, a major arbovirus vector. | Science | 2007 |
| 18314579 | Sybil: methods and software for multiple genome comparison and visualization. | Methods Mol Biol | 2007 |
| 17953480 | Genome sequence of Babesia bovis and comparative analysis of apicomplexan hemoprotozoa. | PLoS Pathog | 2007 |
| 17885136 | Draft genome of the filarial nematode parasite Brugia malayi. | Science | 2007 |
| 16385065 | Global phylogeny of Mycobacterium tuberculosis based on single nucleotide polymorphism (SNP) analysis: insights into tuberculosis evolution, phylogenetic accuracy of other DNA fingerprinting systems, and recommendations for a minimal standard SNP set. | J Bacteriol | 2006 |
| 30408921 | Whole genome comparison of the A. fumigatus family. | Med Mycol | 2006 |
| 16632643 | Comparative genomics of Brassica oleracea and Arabidopsis thaliana reveal gene loss, fragmentation, and dispersal after polyploidy. | Plant Cell | 2006 |
| 16020724 | Comparative genomics of trypanosomatid parasitic protozoa. | Science | 2005 |
| 16159782 | Whole-genome sequence analysis of Pseudomonas syringae pv. phaseolicola 1448A reveals divergence among pathovars in genes involved in virulence and transposition. | J Bacteriol | 2005 |
| 16172379 | Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome". | Proc Natl Acad Sci U S A | 2005 |
| 15994558 | Genome sequence of Theileria parva, a bovine pathogen that transforms lymphocytes. | Science | 2005 |
| 16020725 | The genome sequence of Trypanosoma cruzi, etiologic agent of Chagas disease. | Science | 2005 |
| 14681425 | ApiEST-DB: analyzing clustered EST data of the apicomplexan parasites. | Nucleic Acids Res | 2004 |
| 12519984 | PlasmoDB: the Plasmodium genome resource. A database integrating experimental and computational data. | Nucleic Acids Res | 2003 |
| 12829622 | Transcriptional program of the endocrine pancreas in mice and humans. | Diabetes | 2003 |
| 11752262 | PlasmoDB: the Plasmodium genome resource. An integrated database providing tools for accessing, analyzing and mapping expression and sequence data (both finished and unfinished). | Nucleic Acids Res | 2002 |
| 12368860 | The Plasmodium genome database. | Nature | 2002 |