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Author Details

Antonio Colaprico
Sylvester Comprehensive Cancer Center, University of Miami Miller School of Medicine
2015
26
19
PMIDPaper TitleJournal TitlePublished Year
37551622A workflow to study mechanistic indicators for driver gene prediction with Moonlight.Brief Bioinform2023
37551622A workflow to study mechanistic indicators for driver gene prediction with Moonlight.Brief Bioinform2023
35701533Distinct mechanisms of innate and adaptive immune regulation underlie poor oncologic outcomes associated with KRAS-TP53 co-alteration in pancreatic cancer.Oncogene2022
35701533Distinct mechanisms of innate and adaptive immune regulation underlie poor oncologic outcomes associated with KRAS-TP53 co-alteration in pancreatic cancer.Oncogene2022
33417831Proteogenomic insights into the biology and treatment of HPV-negative head and neck squamous cell carcinoma.Cancer Cell2021
33577785Proteogenomic and metabolomic characterization of human glioblastoma.Cancer Cell2021
33417831Proteogenomic insights into the biology and treatment of HPV-negative head and neck squamous cell carcinoma.Cancer Cell2021
34725325Multi-omics analysis identifies therapeutic vulnerabilities in triple-negative breast cancer subtypes.Nat Commun2021
34497635LR Hunting: A Random Forest Based Cell-Cell Interaction Discovery Method for Single-Cell Gene Expression Data.Front Genet2021
35003218PathwayMultiomics: An R Package for Efficient Integrative Analysis of Multi-Omics Datasets With Matched or Un-matched Samples.Front Genet2021
33577785Proteogenomic and metabolomic characterization of human glioblastoma.Cancer Cell2021
35003218PathwayMultiomics: An R Package for Efficient Integrative Analysis of Multi-Omics Datasets With Matched or Un-matched Samples.Front Genet2021
34497635LR Hunting: A Random Forest Based Cell-Cell Interaction Discovery Method for Single-Cell Gene Expression Data.Front Genet2021
34725325Multi-omics analysis identifies therapeutic vulnerabilities in triple-negative breast cancer subtypes.Nat Commun2021
32430990PathwayPCA: an R/Bioconductor Package for Pathway Based Integrative Analysis of Multi-Omics Data.Proteomics2020
32430990PathwayPCA: an R/Bioconductor Package for Pathway Based Integrative Analysis of Multi-Omics Data.Proteomics2020
31900418Interpreting pathways to discover cancer driver genes with Moonlight.Nat Commun2020
31923397Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma.Cell2020
31900418Interpreting pathways to discover cancer driver genes with Moonlight.Nat Commun2020
31923397Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma.Cell2020
30835723New functionalities in the TCGAbiolinks package for the study and integration of cancer data from GDC and GTEx.PLoS Comput Biol2019
31675502Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma.Cell2019
31433971The Immune Landscape of Cancer.Immunity2019
30835723New functionalities in the TCGAbiolinks package for the study and integration of cancer data from GDC and GTEx.PLoS Comput Biol2019
31675502Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma.Cell2019
31433971The Immune Landscape of Cancer.Immunity2019
29304754Integration of multiple networks and pathways identifies cancer driver genes in pan-cancer analysis.BMC Genomics2018
30096302Comprehensive Characterization of Cancer Driver Genes and Mutations.Cell2018
30139998Polycomb complexes associate with enhancers and promote oncogenic transcriptional programs in cancer through multiple mechanisms.Nat Commun2018
29625053Comprehensive Characterization of Cancer Driver Genes and Mutations.Cell2018
29625049Perspective on Oncogenic Processes at the End of the Beginning of Cancer Genomics.Cell2018
29625051Machine Learning Identifies Stemness Features Associated with Oncogenic Dedifferentiation.Cell2018
29304754Integration of multiple networks and pathways identifies cancer driver genes in pan-cancer analysis.BMC Genomics2018
29562723In-Silico Integration Approach to Identify a Key miRNA Regulating a Gene Network in Aggressive Prostate Cancer.Int J Mol Sci2018
29158192Combination of Gene Expression Signature and Model for End-Stage Liver Disease Score Predicts Survival of Patients With Severe Alcoholic Hepatitis.Gastroenterology2018
30096302Comprehensive Characterization of Cancer Driver Genes and Mutations.Cell2018
30139998Polycomb complexes associate with enhancers and promote oncogenic transcriptional programs in cancer through multiple mechanisms.Nat Commun2018
29625053Comprehensive Characterization of Cancer Driver Genes and Mutations.Cell2018
29625049Perspective on Oncogenic Processes at the End of the Beginning of Cancer Genomics.Cell2018
29625051Machine Learning Identifies Stemness Features Associated with Oncogenic Dedifferentiation.Cell2018
29562723In-Silico Integration Approach to Identify a Key miRNA Regulating a Gene Network in Aggressive Prostate Cancer.Int J Mol Sci2018
29158192Combination of Gene Expression Signature and Model for End-Stage Liver Disease Score Predicts Survival of Patients With Severe Alcoholic Hepatitis.Gastroenterology2018
28605519CancerSubtypes: an R/Bioconductor package for molecular cancer subtype identification, validation and visualization.Bioinformatics2017
28605519CancerSubtypes: an R/Bioconductor package for molecular cancer subtype identification, validation and visualization.Bioinformatics2017
28134831SpidermiR: An R/Bioconductor Package for Integrative Analysis with miRNA Data.Int J Mol Sci2017
28134831SpidermiR: An R/Bioconductor Package for Integrative Analysis with miRNA Data.Int J Mol Sci2017
26704973TCGAbiolinks: an R/Bioconductor package for integrative analysis of TCGA data.Nucleic Acids Res2016
26704973TCGAbiolinks: an R/Bioconductor package for integrative analysis of TCGA data.Nucleic Acids Res2016
28185585How interacting pathways are regulated by miRNAs in breast cancer subtypes.BMC Bioinformatics2016
28185585How interacting pathways are regulated by miRNAs in breast cancer subtypes.BMC Bioinformatics2016
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Collaborators

Tiago C Silva
University of Miami Miller School of Medicine
Co-authored papers 8
Li Ding
McDonnell Genome Institute, Washington University School of Medicine
Co-authored papers 7
Houtan Noushmehr
Henry Ford Hospital
Co-authored papers 6
Bing Zhang
Baylor College of Medicine
Co-authored papers 6
Alexander J Lazar
The University of Texas MD Anderson Cancer Center
Co-authored papers 5
Matthew A Wyczalkowski
Washington University in St Louis
Co-authored papers 5
Song Cao
Washington University in St Louis
Co-authored papers 5
Michael C Wendl
Washington University in St Louis
Co-authored papers 5
Maciej Wiznerowicz
Co-authored papers 5
Yize Li
Co-authored papers 4
Qing Kay Li
Co-authored papers 4
Lily Wang
College of Science, The Australian National University
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Seungyeul Yoo
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Henry Rodriguez
Office of Cancer Clinical Proteomics Research, National Cancer Institute
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Eduard Porta-Pardo
Josep Carreras Leukaemia Research Institute
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Alexey I Nesvizhskii
University of Michigan ann arbor
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Emily S Boja
Office of Cancer Clinical Proteomics Research, National Cancer Institute
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Ana I Robles
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Christopher R Kinsinger
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Mehdi Mesri
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Joshua M Stuart
University of California at Santa Cruz
Co-authored papers 4
Wen-Wei Liang
Washington University in St Louis
Co-authored papers 4
Tara Hiltke
Office of Cancer Clinical Proteomics Research, National Cancer Institute
Co-authored papers 4
Mathangi Thiagarajan
Co-authored papers 4
Matthew H Bailey
Department of Biology at Brigham Young University
Co-authored papers 4
Azra Krek
Co-authored papers 3
Feng Chen
Washington University in St Louis
Co-authored papers 3
Hui Zhang
Co-authored papers 3
Saravana M Dhanasekaran
Co-authored papers 3
Ken Chen
University of Texas MD Anderson Cancer Center
Co-authored papers 3
Release 1.2