Author details

Full Name

Yongchao Dou

Affiliation

ORCID

Career Start Year

2009

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37501682	Proteogenomic Approaches for the Identification of NF1/Neurofibromin-depleted Estrogen Receptor-positive Breast Cancers for Targeted Treatment.	Cancer Res Commun	2023
38009415	Proteogenomics unveils mechanistic insights to precision oncology.	Clin Transl Med	2023
37726316	SEPepQuant enhances the detection of possible isoform regulations in shotgun proteomics.		2023
37619559	A proteogenomics data-driven knowledge base of human cancer.	Cell Syst	2023
37172086	Efficient cancer modeling through CRISPR-Cas9/HDR-based somatic precision gene editing in mice.	Sci Adv	2023
36001024	Proteogenomic Markers of Chemotherapy Resistance and Response in Triple-Negative Breast Cancer.	Cancer Discov	2022
34622160	caAtlas: An immunopeptidome atlas of human cancer.	iScience	2021
33577785	Proteogenomic and metabolomic characterization of human glioblastoma.	Cancer Cell	2021
33280202	MLK4-mediated phosphorylation of histone H3T3 promotes flowering by transcriptional silencing of FLC/MAF in Arabidopsis thaliana.	Plant Journal	2021
33417831	Proteogenomic insights into the biology and treatment of HPV-negative head and neck squamous cell carcinoma.	Cancer Cell	2021
29784765	DAWDLE Interacts with DICER-LIKE Proteins to Mediate Small RNA Biogenesis.	Plant Physiology	2018
30332650	Diverse Long RNAs Are Differentially Sorted into Extracellular Vesicles Secreted by Colorectal Cancer Cells.	Cell Rep	2018
29941559	Degradation of unmethylated miRNA/miRNA*s by a DEDDy-type 3' to 5' exoribonuclease Atrimmer 2 in .	Proceedings of the National Academy of Sciences of the United States of America	2018
29844125	FGFR1-Activated Translation of WNT Pathway Components with Structured 5' UTRs Is Vulnerable to Inhibition of EIF4A-Dependent Translation Initiation.	Cancer Res	2018
27787832	Prediction of Protein Phosphorylation Sites by Integrating Secondary Structure Information and Other One-Dimensional Structural Properties.	Methods in Molecular Biology	2017
29081691	Genome-wide Discovery of Circular RNAs in the Leaf and Seedling Tissues of .	Current Genomics	2017
28232457	Dicer-dependent production of microRNA221 in hepatocytes inhibits p27 and is required for liver regeneration in mice.	American Journal of Physiology - Gastrointestinal and Liver Physiology	2017
27838454	Insect and plant-derived miRNAs in greenbug (Schizaphis graminum) and yellow sugarcane aphid (Sipha flava) revealed by deep sequencing.	Gene	2017
27892494	Circular RNAs are down-regulated in KRAS mutant colon cancer cells and can be transferred to exosomes.	Sci Rep	2016
26339642	Differential Expression Analysis in RNA-Seq by a Naive Bayes Classifier with Local Normalization.	BioMed Research International	2015
25928341	Synergistic and independent actions of multiple terminal nucleotidyl transferases in the 3' tailing of small RNAs in Arabidopsis.	PLoS Genetics	2015
25663109	New measurement for correlation of co-evolution relationship of subsequences in protein.	Interdisciplinary Sciences - Computational Life Sciences	2015
25806518	Genetic and molecular characterization of submergence response identifies Subtol6 as a major submergence tolerance locus in maize.	PLoS ONE	2015
26396121	New Measurement for Correlation of Co-evolution Relationship of Subsequences in Protein.	Interdisciplinary Sciences - Computational Life Sciences	2015
26132860	KRAS-dependent sorting of miRNA to exosomes.	Elife	2015
24623121	PhosphoSVM: prediction of phosphorylation sites by integrating various protein sequence attributes with a support vector machine.	Amino Acids	2014
24214534	Deletion mutagenesis identifies a haploinsufficient role for Î³-zein in opaque2 endosperm modification.	Plant Physiology	2014
24387046	Identification of RNA silencing components in soybean and sorghum.	BMC Bioinformatics	2014
23928653	Genome-wide identification and analysis of membrane-bound O-acyltransferase (MBOAT) gene family in plants.	Planta	2013
24268301	Fuzzy clustering of CPP family in plants with evolution and interaction analyses.	BMC Bioinformatics	2013
21344173	Predicting subcellular location of apoptosis proteins with pseudo amino acid composition: approach from amino acid substitution matrix and auto covariance transformation.	Amino Acids	2012
22802657	Regulation of miRNA abundance by RNA binding protein TOUGH in Arabidopsis.	Proceedings of the National Academy of Sciences of the United States of America	2012
22558194	L1pred: a sequence-based prediction tool for catalytic residues in enzymes with the L1-logreg classifier.	PLoS ONE	2012
21612664	New methods to measure residues coevolution in proteins.	BMC Bioinformatics	2011
21465136	Sequence conservation in the prediction of catalytic sites.	Protein Journal	2011
21235488	Predicting protein subcellular localization by pseudo amino acid composition with a segment-weighted and features-combined approach.	Protein and Peptide Letters	2011
19808039	Several appropriate background distributions for entropy-based protein sequence conservation measures.	Journal of Theoretical Biology	2010
20383542	Prediction of catalytic residues based on an overlapping amino acid classification.	Amino Acids	2010
19130192	Prediction of catalytic residues using the variation of stereochemical properties.	Protein Journal	2009
32214589	Phylogenetic inference from binary sequences reduced by primary DNA sequences.	Journal of Mathematical Chemistry	2009