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Author Details

David A Stahl
University of Washington
1975
242
75
PMIDPaper TitleJournal TitlePublished Year
36847519Cross-Feedings, Competition, and Positive and Negative Synergies in a Four-Species Synthetic Community for Anaerobic Degradation of Cellulose to Methane.mBio2023
37386740Microbially mediated climate feedbacks from wetland ecosystems.Glob Chang Biol2023
34923445Application of pyritic sludge with an anaerobic granule consortium for nitrate removal in low carbon systems.Water Res2022
35680566Microbial maintenance energy quantified and modeled with microcalorimetry.Biotechnol Bioeng2022
35547121Metagenomic Insights Into Competition Between Denitrification and Dissimilatory Nitrate Reduction to Ammonia Within One-Stage and Two-Stage Partial-Nitritation Anammox Bioreactor Configurations.Front Microbiol2022
36053980Ecophysiological and genomic analyses of a representative isolate of highly abundant Bacillus cereus strains in contaminated subsurface sediments.Environ Microbiol2022
35978059Nitrosomonas supralitoralis sp. nov., an ammonia-oxidizing bacterium from beach sand in a supralittoral zone.Arch Microbiol2022
35285696Functional Traits Resolve Mechanisms Governing the Assembly and Distribution of Nitrogen-Cycling Microbial Communities in the Global Ocean.mBio2022
33039834Aerobic granular sludge: Impact of size distribution on nitrification capacity.Water Res2021
33539079Seasonal Prevalence of Ammonia-Oxidizing Archaea in a Full-Scale Municipal Wastewater Treatment Plant Treating Saline Wastewater Revealed by a 6-Year Time-Series Analysis.Environ Sci Technol2021
33563788Sulfur Metabolites Play Key System-Level Roles in Modulating Denitrification.mSystems2021
33841364Mechanism Across Scales: A Holistic Modeling Framework Integrating Laboratory and Field Studies for Microbial Ecology.Front Microbiol2021
33612833Synergistic epistasis enhances the co-operativity of mutualistic interspecies interactions.ISME J2021
34554631The influence of alfalfa-switchgrass intercropping on microbial community structure and function.Environ Microbiol2021
34406920<i>Nitrosopumilus zosterae</i> sp. nov., an autotrophic ammonia-oxidizing archaeon of phylum <i>Thaumarchaeota</i> isolated from coastal eelgrass sediments of Japan.Int J Syst Evol Microbiol2021
33991918Pairing denitrifying phosphorus accumulating organisms with anaerobic ammonium oxidizing bacteria for simultaneous N and P removal.Sci Total Environ2021
34274897Sustained nitrogen loss in a symbiotic association of Comammox Nitrospira and Anammox bacteria.Water Res2021
34060913VB<sub>12</sub>Path for Accurate Metagenomic Profiling of Microbially Driven Cobalamin Synthesis Pathways.mSystems2021
33957310An investigation into the optimal granular sludge size for simultaneous nitrogen and phosphate removal.Water Res2021
34333046An automated multiplexed turbidometric and data collection system for measuring growth kinetics of anaerobes dependent on gaseous substrates.J Microbiol Methods2021
33325687Comment on"A Critical Review on Nitrous Oxide Production by Ammonia-Oxidizing Archaea" by Lan Wu, Xueming Chen, Wei Wei, Yiwen Liu, Dongbo Wang, and Bing-Jie Ni.Environ Sci Technol2021
32252814Small and mighty: adaptation of superphylum Patescibacteria to groundwater environment drives their genome simplicity.Microbiome2020
32071230Nitrifier adaptation to low energy flux controls inventory of reduced nitrogen in the dark ocean.Proc Natl Acad Sci U S A2020
32636492Alternative strategies of nutrient acquisition and energy conservation map to the biogeography of marine ammonia-oxidizing archaea.ISME J2020
32623243Effective nitrogen removal from ammonium-depleted wastewater by partial nitritation and anammox immobilized in granular and thin layer gel carriers.Water Res2020
32955155The path leading to the discovery of the ammoniaoxidizing archaea.Environ Microbiol2020
32817099Effects of Genetic and Physiological Divergence on the Evolution of a Sulfate-Reducing Bacterium under Conditions of Elevated Temperature.mBio2020
32417512Characterization of subsurface media from locations up- and down-gradient of a uranium-contaminated aquifer.Chemosphere2020
32388048Flocs in disguise? High granule abundance found in continuous-flow activated sludge treatment plants.Water Res2020
30289197Iron- and aluminium-induced depletion of molybdenum in acidic environments impedes the nitrogen cycle.Environ Microbiol2019
31462715Expansion of Thaumarchaeota habitat range is correlated with horizontal transfer of ATPase operons.ISME J2019
31430046Nitrous oxide emissions associated with ammonia-oxidizing bacteria abundance in fields of switchgrass with and without intercropped alfalfa.Environ Microbiol Rep2019
31155313Kinetic implication of moving warm side-stream Anaerobic ammonium oxidizing bacteria to cold mainstream wastewater.Bioresour Technol2019
30936420Affinity informs environmental cooperation between ammonia-oxidizing archaea (AOA) and anaerobic ammonia-oxidizing (Anammox) bacteria.ISME J2019
30723459Resource Concentration Modulates the Fate of Dissimilated Nitrogen in a Dual-Pathway Actinobacterium.Front Microbiol2019
29053148Stress response of a marine ammonia-oxidizing archaeon informs physiological status of environmental populations.ISME J2018
30022612Accumulation of NO<sub>2</sub> -cobalamin in nutrient-stressed ammonia-oxidizing archaea and in the oxygen deficient zone of the eastern tropical North Pacific.Environ Microbiol Rep2018
29899515Nutrient transport suggests an evolutionary basis for charged archaeal surface layer proteins.ISME J2018
29687586Ammonia-oxidizing bacteria are the primary N<sub>2</sub> O producers in an ammonia-oxidizing archaea dominated alkaline agricultural soil.Environ Microbiol2018
29377633Constraint-based modelling captures the metabolic versatility of Desulfovibrio vulgaris.Environ Microbiol Rep2018
28028206Two distinct pools of B12 analogs reveal community interdependencies in the ocean.Proc Natl Acad Sci U S A2017
28300407Dynamic Succession of Groundwater Sulfate-Reducing Communities during Prolonged Reduction of Uranium in a Contaminated Aquifer.Environ Sci Technol2017
28211189Influence of oxygen availability on the activities of ammonia-oxidizing archaea.Environ Microbiol Rep2017
28419704Robustness of a model microbial community emerges from population structure among single cells of a clonal population.Environ Microbiol2017
28320772Mechanism for microbial population collapse in a fluctuating resource environment.Mol Syst Biol2017
29034851Nitrosopumilus maritimus gen. nov., sp. nov., Nitrosopumilus cobalaminigenes sp. nov., Nitrosopumilus oxyclinae sp. nov., and Nitrosopumilus ureiphilus sp. nov., four marine ammonia-oxidizing archaea of the phylum Thaumarchaeota.Int J Syst Evol Microbiol2017
29138306Key Metabolites and Mechanistic Changes for Salt Tolerance in an Experimentally Evolved Sulfate-Reducing Bacterium, <i>Desulfovibrio vulgaris</i>.mBio2017
28874410Identification and Characterization of the Major Porin of Desulfovibrio vulgaris Hildenborough.J Bacteriol2017
27120678A Purple Cupredoxin from Nitrosopumilus maritimus Containing a Mononuclear Type 1 Copper Center with an Open Binding Site.J Am Chem Soc2016
26526405Agricultural land usage transforms nitrifier population ecology.Environ Microbiol2016
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Collaborators

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E O Lawrence Berkeley National Laboratory, UCSF Medical Center, University of California, Berkeley, University of Chicago
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Institute for Environmental Genomics, University of Oklahoma
Co-authored papers 5
Joint BioEnergy Institute
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Co-authored papers 4
University of Tennessee
Co-authored papers 4
University of Rhode Island
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Massachusetts Institute of Technology 21 Ames St. Cambridge
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