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Author Details

Adam P Arkin
Lawrence Berkeley National Laboratory
1990
342
80
PMIDPaper TitleJournal TitlePublished Year
37638652Eliminating genes for a two-component system increases PHB productivity in Cupriavidus basilensis 4G11 under PHB suppressing, nonstress conditions.Biotechnol Bioeng2024
37638652Eliminating genes for a two-component system increases PHB productivity in Cupriavidus basilensis 4G11 under PHB suppressing, nonstress conditions.Biotechnol Bioeng2024
38078749A bacterial sensor taxonomy across earth ecosystems for machine learning applications.mSystems2024
38078749A bacterial sensor taxonomy across earth ecosystems for machine learning applications.mSystems2024
36376589Metagenome-assembled genome extraction and analysis from microbiomes using KBase.Nat Protoc2023
36376589Metagenome-assembled genome extraction and analysis from microbiomes using KBase.Nat Protoc2023
37596312Geochemical constraints on bacteriophage infectivity in terrestrial environments.ISME Commun2023
37888487Evaluating E.â¿¿coli genome-scale metabolic model accuracy with high-throughput mutant fitness data.Mol Syst Biol2023
37793542Mixed nitrate and metal contamination influences operational speciation of toxic and essential elements.Environ Pollut2023
38048319Systematic and scalable genome-wide essentiality mapping to identify nonessential genes in phages.PLoS Biol2023
37085475Microbial biomanufacturing for space-exploration-what to take and when to make.Nat Commun2023
37272792Distinct Depth-Discrete Profiles of Microbial Communities and Geochemical Insights in the Subsurface Critical Zone.Appl Environ Microbiol2023
36646697Quantifying the local adaptive landscape of a nascent bacterial community.Nat Commun2023
37065130Large-scale genetic characterization of the model sulfate-reducing bacterium, <i>Desulfovibrio vulgaris</i> Hildenborough.Front Microbiol2023
36805702Multicopy suppressor screens reveal convergent evolution of single-gene lysis proteins.Nat Chem Biol2023
37046248Engineering osmolysis susceptibility in Cupriavidus necator and Escherichia coli for recovery of intracellular products.Microb Cell Fact2023
36453664Data-driven flow-map models for data-efficient discovery of dynamics and fast uncertainty quantification of biological and biochemical systems.Biotechnol Bioeng2023
36451056Publisher Correction: Metagenome-assembled genome extraction and analysis from microbiomes using KBase.Nat Protoc2023
37596312Geochemical constraints on bacteriophage infectivity in terrestrial environments.ISME Commun2023
37793542Mixed nitrate and metal contamination influences operational speciation of toxic and essential elements.Environ Pollut2023
37888487Evaluating E.â¿¿coli genome-scale metabolic model accuracy with high-throughput mutant fitness data.Mol Syst Biol2023
38048319Systematic and scalable genome-wide essentiality mapping to identify nonessential genes in phages.PLoS Biol2023
37085475Microbial biomanufacturing for space-exploration-what to take and when to make.Nat Commun2023
37046248Engineering osmolysis susceptibility in Cupriavidus necator and Escherichia coli for recovery of intracellular products.Microb Cell Fact2023
37272792Distinct Depth-Discrete Profiles of Microbial Communities and Geochemical Insights in the Subsurface Critical Zone.Appl Environ Microbiol2023
37065130Large-scale genetic characterization of the model sulfate-reducing bacterium, <i>Desulfovibrio vulgaris</i> Hildenborough.Front Microbiol2023
36646697Quantifying the local adaptive landscape of a nascent bacterial community.Nat Commun2023
36805702Multicopy suppressor screens reveal convergent evolution of single-gene lysis proteins.Nat Chem Biol2023
36453664Data-driven flow-map models for data-efficient discovery of dynamics and fast uncertainty quantification of biological and biochemical systems.Biotechnol Bioeng2023
36451056Publisher Correction: Metagenome-assembled genome extraction and analysis from microbiomes using KBase.Nat Protoc2023
34490626Sustained Ability of a Natural Microbial Community to Remove Nitrate from Groundwater.Ground Water2022
36374048Interactive Analysis of Functional Residues in Protein Families.mSystems2022
36251274CORAL: A framework for rigorous self-validated data modeling and integrative, reproducible data analysis.Gigascience2022
36173960Ten simple rules for getting and giving credit for data.PLoS Comput Biol2022
35694313A Defined Medium for Cultivation and Exometabolite Profiling of Soil Bacteria.Front Microbiol2022
35737807Development of a Markerless Deletion Mutagenesis System in Nitrate-Reducing Bacterium Rhodanobacter denitrificans.Appl Environ Microbiol2022
35417463Filling gaps in bacterial catabolic pathways with computation and high-throughput genetics.PLoS Genet2022
35475637Complete Genome Sequence of Bacillus cereus Strain CPT56D-587-MTF, Isolated from a Nitrate- and Metal-Contaminated Subsurface Environment.Microbiol Resour Announc2022
36053980Ecophysiological and genomic analyses of a representative isolate of highly abundant Bacillus cereus strains in contaminated subsurface sediments.Environ Microbiol2022
35402883A Phage Foundry Framework to Systematically Develop Viral Countermeasures to Combat Antibiotic-Resistant Bacterial Pathogens.iScience2022
37938300Genotype to ecotype in niche environments: adaptation of Arthrobacter to carbon availability and environmental conditions.ISME Commun2022
34490626Sustained Ability of a Natural Microbial Community to Remove Nitrate from Groundwater.Ground Water2022
35144165Systems-informed genome mining for electroautotrophic microbial production.Bioelectrochemistry2022
35107332Genomic Features and Pervasive Negative Selection in <i>Rhodanobacter</i> Strains Isolated from Nitrate and Heavy Metal Contaminated Aquifer.Microbiol Spectr2022
35076272Global Analysis of Biomineralization Genes in <i>Magnetospirillum magneticum</i> AMB-1.mSystems2022
37938300Genotype to ecotype in niche environments: adaptation of Arthrobacter to carbon availability and environmental conditions.ISME Commun2022
35737807Development of a Markerless Deletion Mutagenesis System in Nitrate-Reducing Bacterium Rhodanobacter denitrificans.Appl Environ Microbiol2022
35475637Complete Genome Sequence of Bacillus cereus Strain CPT56D-587-MTF, Isolated from a Nitrate- and Metal-Contaminated Subsurface Environment.Microbiol Resour Announc2022
35402883A Phage Foundry Framework to Systematically Develop Viral Countermeasures to Combat Antibiotic-Resistant Bacterial Pathogens.iScience2022
35694313A Defined Medium for Cultivation and Exometabolite Profiling of Soil Bacteria.Front Microbiol2022
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Collaborators

Adam M Deutschbauer
Lawrence Berkeley National Laboratory
Co-authored papers 70
Morgan N Price
Lawrence Berkeley National Laboratory
Co-authored papers 62
Terry C Hazen
University of Tennessee
Co-authored papers 59
Jizhong Zhou
Institute for Environmental Genomics, University of Oklahoma
Co-authored papers 48
Judy D Wall
University of Missouri
Co-authored papers 36
Eric J Alm
Massachusetts Institute of Technology 21 Ames St. Cambridge
Co-authored papers 31
Zhili He
Environmental Microbiomics Research Center, Sun Yat-Sen University
Co-authored papers 30
Matthew W Fields
Center for Biofilm Engineering (CBE), Montana State University
Co-authored papers 28
Jay D Keasling
University of California berkeley
Co-authored papers 27
Romy Chakraborty
Lawrence Berkeley National Laboratory
Co-authored papers 24
Paramvir S Dehal
Lawrence Berkeley National Laboratory
Co-authored papers 23
David A Stahl
University of Washington
Co-authored papers 22
Pavel S Novichkov
Lawrence Berkeley National Laboratory
Co-authored papers 20
Michael W W Adams
University of Georgia
Co-authored papers 19
Grant M Zane
University of Missouri
Co-authored papers 18
Marcin P Joachimiak
E O Lawrence Berkeley National Laboratory, UCSF Medical Center, University of California, Berkeley, University of Chicago
Co-authored papers 18
Inna Dubchak
Lawrence Berkeley National Laboratory
Co-authored papers 17
Farris L Poole
University of Georgia
Co-authored papers 15
Dylan Chivian
Lawrence Berkeley National Laboratory
Co-authored papers 15
Dwayne A Elias
Oak Ridge National Laboratory
Co-authored papers 14
Katherine Huang
Broad Institute of MIT and Harvard
Co-authored papers 14
Liyou Wu
Institute for Environmental Genomics, University of Oklahoma
Co-authored papers 14
Michael P Thorgersen
University of Georgia
Co-authored papers 14
Aindrila Mukhopadhyay
Joint BioEnergy Institute
Co-authored papers 14
Qiang He
University of Tennessee
Co-authored papers 14
Dmitry A Rodionov
Sanford Burnham Prebys Medical Discovery Institute
Co-authored papers 13
David V Schaffer
University of California berkeley
Co-authored papers 13
Aifen Zhou
University of Oklahoma
Co-authored papers 12
John-Marc Chandonia
Lawrence Berkeley National Laboratory
Co-authored papers 12
Christopher L Hemme
University of Rhode Island
Co-authored papers 10
Release 1.2