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Author Details

Claudio Angione
2012
47
14
PMIDPaper TitleJournal TitlePublished Year
36720400Multi-dimensional experimental and computational exploration of metabolism pinpoints complex probiotic interactions.2023
36227551Machine Learning Methods for Survival Analysis with Clinical and Transcriptomics Data of Breast Cancer.Methods in Molecular Biology2023
37410704Ten quick tips for avoiding pitfalls in multi-omics data integration analyses.2023
37214239Editorial: Artificial intelligence for data discovery and reuse in endocrinology and metabolism.2023
37140699Integration of epigenetic regulatory mechanisms in heart failure.2023
36814842Metatranscriptomics-guided genome-scale metabolic modeling of microbial communities.2023
36809974Glycosylation spectral signatures for glioma grade discrimination using Raman spectroscopy.2023
35342986Computational profiling of natural compounds as promising inhibitors against the spike proteins of SARS-CoV-2 wild-type and the variants of concern, viral cell-entry process, and cytokine storm in COVID-19.Journal of Cellular Biochemistry2022
36314754Whole-genome sequencing and genome-scale metabolic modeling of Chromohalobacter canadensis 85B to explore its salt tolerance and biotechnological use.MicrobiologyOpen2022
36164827Loss of full-length dystrophin expression results in major cell-autonomous abnormalities in proliferating myoblasts.eLife2022
36343407Clinical stratification improves the diagnostic accuracy of small omics datasets within machine learning and genome-scale metabolic modelling methods.Computers in Biology and Medicine2022
35860672Genome Sequencing Variations in the , an Unconventional Natural Model of Aging and Alzheimer's Disease.Frontiers in Aging Neuroscience2022
35604554A Practical Guide to Integrating Multimodal Machine Learning and Metabolic Modeling.Methods in Molecular Biology2022
36400876The diagnostic and prognostic potential of the EGFR/MUC4/MMP9 axis in glioma patients.Scientific Reports2022
33757121Dissecting the transcriptome in cardiovascular disease.Cardiovascular Research2022
34499112Integrating genome-scale metabolic modelling and transfer learning for human gene regulatory network reconstruction.2022
35143521Using machine learning as a surrogate model for agent-based simulations.PLoS ONE2022
34381128Author Correction: Integrated multiâ¿¿omics analysis of ovarian cancer using variational autoencoders.Scientific Reports2021
32248120Discovering Essential Multiple Gene Effects Through Large Scale Optimization: An Application to Human Cancer Metabolism.IEEE/ACM Transactions on Computational Biology and Bioinformatics2021
33737557Integrated multi-omics analysis of ovarian cancer using variational autoencoders.Scientific Reports2021
34330302Situating agent-based modelling in population health research.Emerging Themes in Epidemiology2021
33974036Multimodal regularized linear models with flux balance analysis for mechanistic integration of omics data.2021
34632416Protocol for hybrid flux balance, statistical, and machine learning analysis of multi-omic data from the cyanobacterium sp. PCC 7002.STAR Protocols2021
34409594Genome-scale metabolic modelling of SARS-CoV-2 in cancer cells reveals an increased shift to glycolytic energy production.FEBS Letters2021
32675233A mechanism-aware and multiomic machine-learning pipeline characterizes yeast cell growth.Proceedings of the National Academy of Sciences of the United States of America2020
33354660A Hybrid Flux Balance Analysis and Machine Learning Pipeline Elucidates Metabolic Adaptation in Cyanobacteria.iScience2020
31295267Machine and deep learning meet genome-scale metabolic modeling.PLoS Computational Biology2019
31281846Human Systems Biology and Metabolic Modelling: A Review-From Disease Metabolism to Precision Medicine.BioMed Research International2019
30699206Social dynamics modeling of chrono-nutrition.PLoS Comput Biol2019
29222764Optimization of Multi-Omic Genome-Scale Models: Methodologies, Hands-on Tutorial, and Perspectives.Methods Mol Biol2018
28575143Seeing the wood for the trees: a forest of methods for optimization and omic-network integration in metabolic modelling.Brief Bioinform2018
28968777Integrating splice-isoform expression into genome-scale models characterizes breast cancer metabolism.2018
30453872The poly-omics of ageing through individual-based metabolic modelling.BMC Bioinformatics2018
30497359CiliateGEM: an open-project and a tool for predictions of ciliate metabolic variations and experimental condition design.BMC Bioinformatics2018
30588397In silico engineering of metabolism reveals new biomarkers for increased biosurfactant production.PeerJ2018
28209199Making life difficult for Clostridium difficile: augmenting the pathogen's metabolic model with transcriptomic and codon usage data for better therapeutic target characterization.BMC Syst Biol2017
29134060Modelling pyruvate dehydrogenase under hypoxia and its role in cancer metabolism.Royal Society Open Science2017
26961692Multiplex methods provide effective integration of multi-omic data in genome-scale models.BMC Bioinformatics2016
27199183Erratum: Predictive analytics of environmental adaptability in multi-omic network models.Sci Rep2016
26376088Multi-Target Analysis and Design of Mitochondrial Metabolism.PLoS One2015
25856685A Hybrid of Metabolic Flux Analysis and Bayesian Factor Modeling for Multiomic Temporal Pathway Activation.ACS Synth Biol2015
26482106Predictive analytics of environmental adaptability in multi-omic network models.Sci Rep2015
25309577Bioremediation in marine ecosystems: a computational study combining ecological modeling and flux balance analysis.Front Genet2014
23654280Efficient behavior of photosynthetic organelles via Pareto optimality, identifiability, and sensitivity analysis.ACS Synth Biol2013
24334395Pareto optimality in organelle energy metabolism analysis.IEEE/ACM Trans Comput Biol Bioinform2013
23925151A design automation framework for computational bioenergetics in biological networks.Mol Biosyst2013
23044547Robust design of microbial strains.Bioinformatics2012
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Collaborators

Pietro Li??
University of Cambridge
Co-authored papers 15
Noel Burtt
Co-authored papers 1
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