|
| 36959444 | Quality Estimates for 3D Protein Models. | Methods Mol Biol | 2023 |
| 37492575 | Are the integrin binding motifs within SARS CoV-2 spike protein and MHC class II alleles playing the key role in COVID-19? | Front Immunol | 2023 |
| 37314190 | Estimation of model accuracy in CASP15 using the ModFOLDdock server. | Proteins | 2023 |
| 37102670 | Prediction of protein structures, functions and interactions using the IntFOLD7, MultiFOLD and ModFOLDdock servers. | Nucleic Acids Res | 2023 |
| 37359722 | Improvement of protein tertiary and quaternary structure predictions using the ReFOLD refinement method and the AlphaFold2 recycling process. | Bioinform Adv | 2023 |
| 36959445 | Using Local Protein Model Quality Estimates to Guide a Molecular Dynamics-Based Refinement Strategy. | Methods Mol Biol | 2023 |
| 32822477 | Structural, functional, and mechanistic insights uncover the fundamental role of orphan connexin-62 in platelets. | Blood | 2021 |
| 34432238 | Proteins and Their Interacting Partners: An Introduction to Protein-Ligand Binding Site Prediction Methods with a Focus on FunFOLD3. | Methods Mol Biol | 2021 |
| 33963867 | ModFOLD8: accurate global and local quality estimates for 3D protein models. | Nucleic Acids Res | 2021 |
| 34009387 | ReFOLD3: refinement of 3D protein models with gradual restraints based on predicted local quality and residue contacts. | Nucleic Acids Res | 2021 |
| 34032269 | MAP4K4 expression in cardiomyocytes: multiple isoforms, multiple phosphorylations and interactions with striatins. | Biochem J | 2021 |
| 33950383 | Computational Methods for the Elucidation of Protein Structure and Interactions. | Methods Mol Biol | 2021 |
| 32527260 | PINOT: an intuitive resource for integrating protein-protein interactions. | Cell Commun Signal | 2020 |
| 32621219 | Estimating the Quality of 3D Protein Models Using the ModFOLD7 Server. | Methods Mol Biol | 2020 |
| 31075942 | Methods for the Refinement of Protein Structure 3D Models. | Int J Mol Sci | 2019 |
| 31744546 | The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens. | Genome Biol | 2019 |
| 31265154 | Estimation of model accuracy in CASP13. | Proteins | 2019 |
| 31199821 | Characterisation of HvVIP1 and expression profile analysis of stress response regulators in barley under Agrobacterium and Fusarium infections. | PLoS One | 2019 |
| 31045208 | IntFOLD: an integrated web resource for high performance protein structure and function prediction. | Nucleic Acids Res | 2019 |
| 28748648 | Accurate template-based modeling in CASP12 using the IntFOLD4-TS, ModFOLD6, and ReFOLD methods. | Proteins | 2018 |
| 29967418 | An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12. | Sci Rep | 2018 |
| 28975666 | Methods for estimation of model accuracy in CASP12. | Proteins | 2018 |
| 29206185 | Predictive and Experimental Approaches for Elucidating Protein-Protein Interactions and Quaternary Structures. | Int J Mol Sci | 2017 |
| 28460136 | ModFOLD6: an accurate web server for the global and local quality estimation of 3D protein models. | Nucleic Acids Res | 2017 |
| 28402475 | ReFOLD: a server for the refinement of 3D protein models guided by accurate quality estimates. | Nucleic Acids Res | 2017 |
| 28441463 | RAPIDSNPs: A new computational pipeline for rapidly identifying key genetic variants reveals previously unidentified SNPs that are significantly associated with individual platelet responses. | PLoS One | 2017 |
| 26869072 | Genetic diversity at the Dhn3 locus in Turkish Hordeum spontaneum populations with comparative structural analyses. | Sci Rep | 2016 |
| 26519323 | Toolbox for Protein Structure Prediction. | Methods Mol Biol | 2016 |
| 27094282 | In silico Identification and Characterization of Protein-Ligand Binding Sites. | Methods Mol Biol | 2016 |
| 25354687 | In silico identification and three-dimensional modelling of the missense mutation in ADAMTS2 in a sheep flock with dermatosparaxis. | Vet Dermatol | 2015 |
| 28357301 | Evolutionary rewiring of bacterial regulatory networks. | Microb Cell | 2015 |
| 26287166 | Disorder Prediction Methods, Their Applicability to Different Protein Targets and Their Usefulness for Guiding Experimental Studies. | Int J Mol Sci | 2015 |
| 26694353 | Proteins and Their Interacting Partners: An Introduction to Protein-Ligand Binding Site Prediction Methods. | Int J Mol Sci | 2015 |
| 26140983 | GRID and docking analyses reveal a molecular basis for flavonoid inhibition of Src family kinase activity. | J Nutr Biochem | 2015 |
| 25722415 | Evolution. Evolutionary resurrection of flagellar motility via rewiring of the nitrogen regulation system. | Science | 2015 |
| 25820431 | IntFOLD: an integrated server for modelling protein structures and functions from amino acid sequences. | Nucleic Acids Res | 2015 |
| 24573476 | Assessing the quality of modelled 3D protein structures using the ModFOLD server. | Methods Mol Biol | 2014 |
| 24614104 | Dominant β-catenin mutations cause intellectual disability with recognizable syndromic features. | J Clin Invest | 2014 |
| 23761453 | The FunFOLD2 server for the prediction of protein-ligand interactions. | Nucleic Acids Res | 2013 |
| 24091536 | The mysterious presence of a 5-methylcytosine oxidase in the Drosophila genome: possible explanations. | Cell Cycle | 2013 |
| 23889253 | SOcK, MiSTs, MASK and STicKs: the GCKIII (germinal centre kinase III) kinases and their heterologous protein-protein interactions. | Biochem J | 2013 |
| 23620298 | The ModFOLD4 server for the quality assessment of 3D protein models. | Nucleic Acids Res | 2013 |
| 22229648 | A novel non-canonical mechanism of regulation of MST3 (mammalian Sterile20-related kinase 3). | Biochem J | 2012 |
| 23231440 | Structure and evolution of barley powdery mildew effector candidates. | BMC Genomics | 2012 |
| 22592378 | Improvement of 3D protein models using multiple templates guided by single-template model quality assessment. | Bioinformatics | 2012 |
| 22666491 | FunFOLDQA: a quality assessment tool for protein-ligand binding site residue predictions. | PLoS One | 2012 |
| 21453771 | Proteogenomics and in silico structural and functional annotation of the barley powdery mildew Blumeria graminis f. sp. hordei. | Methods | 2011 |
| 22069035 | Automated tertiary structure prediction with accurate local model quality assessment using the IntFOLD-TS method. | Proteins | 2011 |
| 21575183 | FunFOLD: an improved automated method for the prediction of ligand binding residues using 3D models of proteins. | BMC Bioinformatics | 2011 |
| 21459847 | The IntFOLD server: an integrated web resource for protein fold recognition, 3D model quality assessment, intrinsic disorder prediction, domain prediction and ligand binding site prediction. | Nucleic Acids Res | 2011 |