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Author Details

Ruth H??ttenhain
Quantitative Biosciences Institute (QBI), University of California san francisco
2009
36
25
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37090610A proximity proteomics pipeline with improved reproducibility and throughput.bioRxiv2024
37090610A proximity proteomics pipeline with improved reproducibility and throughput.bioRxiv2024
37738970SARS-CoV-2 variants evolve convergent strategies to remodel the host response.Cell2023
37738970SARS-CoV-2 variants evolve convergent strategies to remodel the host response.Cell2023
37863045The multi-lineage transcription factor ISL1 controls cardiomyocyte cell fate through interaction with NKX2.5.Stem Cell Reports2023
37863045The multi-lineage transcription factor ISL1 controls cardiomyocyte cell fate through interaction with NKX2.5.Stem Cell Reports2023
35082446Brahma safeguards canalization of cardiac mesoderm differentiation.Nature2022
36087581Signaling snapshots of a serotonin receptor activated by the prototypical psychedelic LSD.Neuron2022
36075902Structure-function analysis of enterovirus protease 2A in complex with its essential host factor SETD3.Nat Commun2022
35938400Transcription Factor GATA4 Regulates Cell Type-Specific Splicing Through Direct Interaction With RNA in Human Induced Pluripotent Stem Cell-Derived Cardiac Progenitors.Circulation2022
35063084Tau interactome maps synaptic and mitochondrial processes associated with neurodegeneration.Cell2022
35182466Transcription factor protein interactomes reveal genetic determinants in heart disease.Cell2022
35082446Brahma safeguards canalization of cardiac mesoderm differentiation.Nature2022
36075902Structure-function analysis of enterovirus protease 2A in complex with its essential host factor SETD3.Nat Commun2022
35938400Transcription Factor GATA4 Regulates Cell Type-Specific Splicing Through Direct Interaction With RNA in Human Induced Pluripotent Stem Cell-Derived Cardiac Progenitors.Circulation2022
36087581Signaling snapshots of a serotonin receptor activated by the prototypical psychedelic LSD.Neuron2022
35182466Transcription factor protein interactomes reveal genetic determinants in heart disease.Cell2022
35063084Tau interactome maps synaptic and mitochondrial processes associated with neurodegeneration.Cell2022
33464917Proteomic Approaches to Study SARS-CoV-2 Biology and COVID-19 Pathology.J Proteome Res2021
33464917Proteomic Approaches to Study SARS-CoV-2 Biology and COVID-19 Pathology.J Proteome Res2021
32353859A SARS-CoV-2 protein interaction map reveals targets for drug repurposing.Nature2020
32060427A systems approach to infectious disease.Nat Rev Genet2020
32353859A SARS-CoV-2 protein interaction map reveals targets for drug repurposing.Nature2020
32929271MassIVE.quant: a community resource of quantitative mass spectrometry-based proteomics datasets.Nat Methods2020
32645325The Global Phosphorylation Landscape of SARS-CoV-2 Infection.Cell2020
33303586Genetic interaction mapping informs integrative structure determination of protein complexes.Science2020
33060197Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms.Science2020
32060427A systems approach to infectious disease.Nat Rev Genet2020
33060197Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms.Science2020
33303586Genetic interaction mapping informs integrative structure determination of protein complexes.Science2020
32929271MassIVE.quant: a community resource of quantitative mass spectrometry-based proteomics datasets.Nat Methods2020
32645325The Global Phosphorylation Landscape of SARS-CoV-2 Infection.Cell2020
31289117A Targeted Mass Spectrometry Strategy for Developing Proteomic Biomarkers: A Case Study of Epithelial Ovarian Cancer.Mol Cell Proteomics2019
31527793Enterovirus pathogenesis requires the host methyltransferase SETD3.Nat Microbiol2019
31289117A Targeted Mass Spectrometry Strategy for Developing Proteomic Biomarkers: A Case Study of Epithelial Ovarian Cancer.Mol Cell Proteomics2019
31527793Enterovirus pathogenesis requires the host methyltransferase SETD3.Nat Microbiol2019
29847809Similarities and Differences of Blood N-Glycoproteins in Five Solid Carcinomas at Localized Clinical Stage Analyzed by SWATH-MS.Cell Rep2018
30166453CRL4<sup>AMBRA1</sup> targets Elongin C for ubiquitination and degradation to modulate CRL5 signaling.EMBO J2018
30053424The Psychiatric Cell Map Initiative: A Convergent Systems Biological Approach to Illuminating Key Molecular Pathways in Neuropsychiatric Disorders.Cell2018
29847809Similarities and Differences of Blood N-Glycoproteins in Five Solid Carcinomas at Localized Clinical Stage Analyzed by SWATH-MS.Cell Rep2018
30166453CRL4<sup>AMBRA1</sup> targets Elongin C for ubiquitination and degradation to modulate CRL5 signaling.EMBO J2018
30053424The Psychiatric Cell Map Initiative: A Convergent Systems Biological Approach to Illuminating Key Molecular Pathways in Neuropsychiatric Disorders.Cell2018
28388416An Approach to Spatiotemporally Resolve Protein Interaction Networks in Living Cells.Cell2017
28388416An Approach to Spatiotemporally Resolve Protein Interaction Networks in Living Cells.Cell2017
26253081Prediction of colorectal cancer diagnosis based on circulating plasma proteins.EMBO Mol Med2015
26253081Prediction of colorectal cancer diagnosis based on circulating plasma proteins.EMBO Mol Med2015
24443746Targeted peptide measurements in biology and medicine: best practices for mass spectrometry-based assay development using a fit-for-purpose approach.Mol Cell Proteomics2014
24443746Targeted peptide measurements in biology and medicine: best practices for mass spectrometry-based assay development using a fit-for-purpose approach.Mol Cell Proteomics2014
23322582Quantitative measurements of N-linked glycoproteins in human plasma by SWATH-MS.Proteomics2013
23887179Automated selected reaction monitoring data analysis workflow for large-scale targeted proteomic studies.Nat Protoc2013
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Collaborators

Nevan J Krogan (CM4AI)
University of California San Francisco
Co-authored papers 19
Ruedi Aebersold
Institute of Molecular Systems Biology, ETH Zurich
Co-authored papers 15
Jiewei Xu
Quantitative Biosciences Institute (QBI), University of California san francisco
Co-authored papers 9
Olga Vitek
Khoury College of Computer Sciences, Northeastern University
Co-authored papers 6
Manon Eckhardt
Quantitative Biosciences Institute (QBI), University of California san francisco
Co-authored papers 6
Gwendolyn M Jang
Gladstone Institute of Data Science and Biotechnology, J. David Gladstone Institutes
Co-authored papers 6
Robyn M Kaake
J. David Gladstone Institutes
Co-authored papers 5
Danielle L Swaney
J. David Gladstone Institutes
Co-authored papers 5
Yansheng Liu
Yale University School of Medicine
Co-authored papers 4
Melanie Ott
Gladstone Institute of Virology
Co-authored papers 4
Pedro Beltrao
Institute of Molecular Systems Biology, ETH Zurich
Co-authored papers 4
Mehdi Bouhaddou
J. David Gladstone Institutes
Co-authored papers 4
Helene Foussard
Quantitative Biosciences Institute (QBI), University of California san francisco
Co-authored papers 4
Joseph B Hiatt
Fred Hutchinson Cancer Center
Co-authored papers 4
Lisa Miorin
Icahn School of Medicine at Mount Sinai
Co-authored papers 4
Margaret Soucheray
J. David Gladstone Institutes
Co-authored papers 4
Kliment A Verba
University of California, University of California San Francisco
Co-authored papers 4
Kirsten Obernier (CM4AI)
University of California San Francisco
Co-authored papers 4
Brian K Shoichet
Department of Pharmaceutical Chemistry, University of California san francisco
Co-authored papers 4
Jyoti Batra
J. David Gladstone Institutes
Co-authored papers 4
Kris M White
Quantitative Biosciences Institute (QBI) Coronavirus Research Group (QCRG)
Co-authored papers 4
Mark von Zastrow
University of California san francisco
Co-authored papers 4
Robert L Moritz
Institute for Systems Biology
Co-authored papers 4
David E Gordon
Emory University
Co-authored papers 4
Paola Picotti
Institute of Molecular Systems Biology, ETH Zurich
Co-authored papers 3
Lukas Reiter
Co-authored papers 3
Deepak Srivastava
Gladstone Institutes San Francisco
Co-authored papers 3
Andrej Sali (CM4AI)
University of California San Francisco
Co-authored papers 3
Danish Memon
European Bioinformatics Institute
Co-authored papers 3
Hannes Braberg
University of California San Francisco
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