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Author Details

Xianjin Xu
Dalton Cardiovascular Research Center, University of Missouri
2010
33
13
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37365936Discriminating physiological from non-physiological interfaces in structures of protein complexes: A community-wide study.Proteomics2023
37905971Impact of AlphaFold on structure prediction of protein complexes: The CASP15-CAPRI experiment.Proteins2023
37888817Current Computational Methods for Protein-Peptide Complex Structure Prediction.Curr Med Chem2023
37283068Template-guided method for protein-ligand complex structure prediction: Application to CASP15 protein-ligand studies.Proteins2023
37365936Discriminating physiological from non-physiological interfaces in structures of protein complexes: A community-wide study.Proteomics2023
37905971Impact of AlphaFold on structure prediction of protein complexes: The CASP15-CAPRI experiment.Proteins2023
37888817Current Computational Methods for Protein-Peptide Complex Structure Prediction.Curr Med Chem2023
37283068Template-guided method for protein-ligand complex structure prediction: Application to CASP15 protein-ligand studies.Proteins2023
34931833Predicting Protein-Peptide Complex Structures by Accounting for Peptide Flexibility and the Physicochemical Environment.J Chem Inf Model2022
36351900An allosteric modulator activates BK channels by perturbing coupling between Ca<sup>2+</sup> binding and pore opening.Nat Commun2022
36543893Author Correction: A PIP<sub>2</sub> substitute mediates voltage sensor-pore coupling in KCNQ activation.Commun Biol2022
34931833Predicting Protein-Peptide Complex Structures by Accounting for Peptide Flexibility and the Physicochemical Environment.J Chem Inf Model2022
36543893Author Correction: A PIP<sub>2</sub> substitute mediates voltage sensor-pore coupling in KCNQ activation.Commun Biol2022
36351900An allosteric modulator activates BK channels by perturbing coupling between Ca<sup>2+</sup> binding and pore opening.Nat Commun2022
33990467Modulating the voltage sensor of a cardiac potassium channel shows antiarrhythmic effects.Proc Natl Acad Sci U S A2021
33990467Modulating the voltage sensor of a cardiac potassium channel shows antiarrhythmic effects.Proc Natl Acad Sci U S A2021
34809457A Selective Tether Recruits Activated Response Regulator CheB to Its Chemoreceptor Substrate.mBio2021
34809457A Selective Tether Recruits Activated Response Regulator CheB to Its Chemoreceptor Substrate.mBio2021
32483825Performance of human and server prediction in CAPRI rounds 38-45.Proteins2020
32015334Two-stage electro-mechanical coupling of a K<sub>V</sub> channel in voltage-dependent activation.Nat Commun2020
31793016PepPro: A Nonredundant Structure Data Set for Benchmarking Peptide-Protein Computational Docking.J Comput Chem2020
32483825Performance of human and server prediction in CAPRI rounds 38-45.Proteins2020
32678288A PIP<sub>2</sub> substitute mediates voltage sensor-pore coupling in KCNQ activation.Commun Biol2020
32621230MDockPeP: A Web Server for Blind Prediction of Protein-Peptide Complex Structures.Methods Mol Biol2020
32015334Two-stage electro-mechanical coupling of a K<sub>V</sub> channel in voltage-dependent activation.Nat Commun2020
31793016PepPro: A Nonredundant Structure Data Set for Benchmarking Peptide-Protein Computational Docking.J Comput Chem2020
32678288A PIP<sub>2</sub> substitute mediates voltage sensor-pore coupling in KCNQ activation.Commun Biol2020
32621230MDockPeP: A Web Server for Blind Prediction of Protein-Peptide Complex Structures.Methods Mol Biol2020
30689079Predicting protein-ligand binding modes for CELPP and GC3: workflows and insight.J Comput Aided Mol Des2019
31612567Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment.Proteins2019
30689079Predicting protein-ligand binding modes for CELPP and GC3: workflows and insight.J Comput Aided Mol Des2019
31612567Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment.Proteins2019
29127582Lessons learned from participating in D3R 2016 Grand Challenge 2: compounds targeting the farnesoid X receptor.J Comput Aided Mol Des2018
30368849MDockPeP: An ab-initio protein-peptide docking server.J Comput Chem2018
29127582Lessons learned from participating in D3R 2016 Grand Challenge 2: compounds targeting the farnesoid X receptor.J Comput Aided Mol Des2018
29577065Docking-based inverse virtual screening: methods, applications, and challenges.Biophys Rep2018
30368849MDockPeP: An ab-initio protein-peptide docking server.J Comput Chem2018
29577065Docking-based inverse virtual screening: methods, applications, and challenges.Biophys Rep2018
27802576Performance of MDockPP in CAPRI rounds 28-29 and 31-35 including the prediction of water-mediated interactions.Proteins2017
28668990Improving binding mode and binding affinity predictions of docking by ligand-based search of protein conformations: evaluation in D3R grand challenge 2015.J Comput Aided Mol Des2017
27802576Performance of MDockPP in CAPRI rounds 28-29 and 31-35 including the prediction of water-mediated interactions.Proteins2017
28236229The Usage of ACCLUSTER for Peptide Binding Site Prediction.Methods Mol Biol2017
28236229The Usage of ACCLUSTER for Peptide Binding Site Prediction.Methods Mol Biol2017
28668990Improving binding mode and binding affinity predictions of docking by ligand-based search of protein conformations: evaluation in D3R grand challenge 2015.J Comput Aided Mol Des2017
27010673SM-TF: A structural database of small molecule-transcription factor complexes.J Comput Chem2016
27010673SM-TF: A structural database of small molecule-transcription factor complexes.J Comput Chem2016
27122118Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment.Proteins2016
27642160Fully Blind Docking at the Atomic Level for Protein-Peptide Complex Structure Prediction.Structure2016
27642160Fully Blind Docking at the Atomic Level for Protein-Peptide Complex Structure Prediction.Structure2016
27122118Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment.Proteins2016
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Collaborators

Xiaoqin Zou
Dalton Cardiovascular Research Center, University of Missouri
Co-authored papers 25
Cun Xin Wang
Co-authored papers 8
Rui Duan
Co-authored papers 7
Zhiwei Ma
Dalton Cardiovascular Research Center, University of Missouri
Co-authored papers 6
Chengfei Yan
Huazhong University of Science and Technology
Co-authored papers 6
Shoshana J Wodak
VIB-VUB Center for Structural Biology
Co-authored papers 5
Juan Fern??ndez-Recio
Instituto de Ciencias de la Vid y del Vino (ICVV-CSIC)
Co-authored papers 5
Alexandre M J J Bonvin
Bijvoet Center for Biomolecular Research, Utrecht University
Co-authored papers 5
Liming Qiu
Perelman School of Medicine, University of Pennsylvania
Co-authored papers 5
Brian Jim??nez-Garc??a
Utrecht University
Co-authored papers 4
Romina Oliva
University of Naples "Parthenope"
Co-authored papers 4
Luigi Cavallo
King Abdullah University of Science and Technology (KAUST)
Co-authored papers 4
Genki Terashi
Co-authored papers 4
Daisuke Kihara
Purdue University
Co-authored papers 4
Zhiping Weng
University of Massachusetts Medical School
Co-authored papers 3
Jianlin Cheng
University of Missouri
Co-authored papers 3
Sandor Vajda
Boston University
Co-authored papers 3
Paul A Bates
The Francis Crick Institute
Co-authored papers 3
Chaok Seok
Seoul National University
Co-authored papers 3
Marc F Lensink
University Lille, CNRS
Co-authored papers 3
Didier Barradas-Bautista
Co-authored papers 3
Sameer Velankar
European Bioinformatics Institute
Co-authored papers 3
Ceslovas Venclovas
Co-authored papers 3
Sheng-You Huang
Huazhong University of Science and Technology
Co-authored papers 3
Brian G Pierce
University of Maryland Institute for Bioscience and Biotechnology Research
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Thom Vreven
Visterra Inc.
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Shan Chang
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Iain H Moal
GSK Medicines Research Centre
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Release 1.2