Author details

Full Name

Joshua C Denny

Affiliation

Vanderbilt University

ORCID

Career Start Year

2000

Papers

420

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36205043	The Impact of COVID-19 on the All of Us Research Program.	Am J Epidemiol	2023
37669985	Demonstrating paths for unlocking the value of cloud genomics through cross cohort analysis.	Nat Commun	2023
37561600	The <i>All of Us</i> Data and Research Center: Creating a Secure, Scalable, and Sustainable Ecosystem for Biomedical Research.	Annu Rev Biomed Data Sci	2023
37662324	Clinical consequences of a polygenic predisposition to benign lower white blood cell counts: Consequences of benign WBC count genetics.	medRxiv	2023
37622442	A test of automated use of electronic health records to aid in diagnosis of genetic disease.	Genet Med	2023
37898691	Genetic variation in the human leukocyte antigen region confers susceptibility to Clostridioides difficile infection.	Sci Rep	2023
37651384	Population genetic testing and SERPINA1 sequencing identifies unidentified alpha-1 antitrypsin deficiency alleles and gene-environment interaction with hepatitis C infection.	PLoS One	2023
37607538	The phenotype-genotype reference map: Improving biobank data science through replication.	Am J Hum Genet	2023
37930895	Next-generation phenotyping: introducing phecodeX for enhanced discovery research in medical phenomics.	Bioinformatics	2023
38091411	Data-driven science and diversity in the All of Us Research Program.	Sci Transl Med	2023
37968452	Author Correction: Genetic variation in the human leukocyte antigen region confers susceptibility to Clostridioides difficile infection.	Sci Rep	2023
37150941	Drug-Induced Liver Injury with Commonly Used Antibiotics in the All of Us Research Program.	Clin Pharmacol Ther	2023
37034649	Multi-ancestry genome-wide study in >2.5 million individuals reveals heterogeneity in mechanistic pathways of type 2 diabetes and complications.	medRxiv	2023
37096581	Phenotype Risk Score but Not Genetic Risk Score Aids in Identifying Individuals With Systemic Lupus Erythematosus in the Electronic Health Record.	Arthritis Rheumatol	2023
37196047	Multi-ancestry genome- and phenome-wide association studies of diverticular disease in electronic health records with natural language processing enriched phenotyping algorithm.	PLoS One	2023
36621880	Returning integrated genomic risk and clinical recommendations: The eMERGE study.	Genet Med	2023
36474423	Characterizing variability of electronic health record-driven phenotype definitions.	J Am Med Inform Assoc	2023
36746961	Author Correction: Genetic regulation of serum IgA levels and susceptibility to common immune, infectious, kidney, and cardio-metabolic traits.	Nat Commun	2023
36540998	Quantifying factors that affect polygenic risk score performance across diverse ancestries and age groups for body mass index.	Pac Symp Biocomput	2023
35102830	The U.S. National Library of Medicine's Impact on Precision and Genomic Medicine.	Stud Health Technol Inform	2022
35701404	Large-scale genomic analyses reveal insights into pleiotropy across circulatory system diseases and nervous system disorders.	Nat Commun	2022
35600119	The U.S. National Library of Medicine's impact on precision and genomic medicine.	Inf Serv Use	2022
35485600	A research agenda to support the development and implementation of genomics-based clinical informatics tools and resources.	J Am Med Inform Assoc	2022
35590255	Psychiatric manifestations of rare variation in medically actionable genes: a PheWAS approach.	BMC Genomics	2022
35446370	Association of Pathogenic Variants in Hereditary Cancer Genes With Multiple Diseases.	JAMA Oncol	2022
35446370	Association of Pathogenic Variants in Hereditary Cancer Genes With Multiple Diseases.	JAMA Oncol	2022
36372681	Quantifying the phenome-wide disease burden of obesity using electronic health records and genomics.	Obesity (Silver Spring)	2022
36333501	Multi-ancestry genome-wide association analyses identify novel genetic mechanisms in rheumatoid arthritis.	Nat Genet	2022
36048450	Hereditary Cancer Syndromes-A Broader Clinical Spectrum Than Previously Understood?-Reply.	JAMA Oncol	2022
33611730	CYP2C19 Loss-of-Function Associated with First-Time Ischemic Stroke in Non-surgical Asymptomatic Carotid Artery Stenosis During Clopidogrel Therapy.	Transl Stroke Res	2022
35226188	Uterine fibroid polygenic risk score (PRS) associates and predicts risk for uterine fibroid.	Hum Genet	2022
35157022	Cox regression is robust to inaccurate EHR-extracted event time: an application to EHR-based GWAS.	Bioinformatics	2022
35013250	Integrating gene expression and clinical data to identify drug repurposing candidates for hyperlipidemia and hypertension.	Nat Commun	2022
34982132	Phenome-Wide Association Studies.	JAMA	2022
35218343	Genetically predicted sex hormone levels and health outcomes: phenome-wide Mendelian randomization investigation.	Int J Epidemiol	2022
35216901	The reckoning: The return of genomic results to 1444 participants across the eMERGE3 Network.	Genet Med	2022
34930020	Arrhythmia Variant Associations and Reclassifications in the eMERGE-III Sequencing Study.	Circulation	2022
32952152	Evaluation of the MC4R gene across eMERGE network identifies many unreported obesity-associated variants.	Int J Obes (Lond)	2021
36778587	I can drive in Iceland: Enabling international joint analyses.	Cell Genom	2021
33850243	Medical records-based chronic kidney disease phenotype for clinical care and "big data" observational and genetic studies.	NPJ Digit Med	2021
33740447	Precision medicine in 2030-seven ways to transform healthcare.	Cell	2021
33712848	DDIWAS: High-throughput electronic health record-based screening of drug-drug interactions.	J Am Med Inform Assoc	2021
33822779	Correction: A missense variant in Mitochondrial Amidoxime Reducing Component 1 gene and protection against liver disease.	PLoS Genet	2021
33749793	Meeting the challenge: Health information technology's essential role in achieving precision medicine.	J Am Med Inform Assoc	2021
34766590	APOL1 renal risk variants are associated with obesity and body composition in African ancestry adults: An observational genotype-phenotype association study.	Medicine (Baltimore)	2021
33941608	Medical Records-Based Genetic Studies of the Complement System.	J Am Soc Nephrol	2021
34180972	Association Between a Common, Benign Genotype and Unnecessary Bone Marrow Biopsies Among African American Patients.	JAMA Intern Med	2021
34097045	A Mendelian Randomization Approach Using 3-HMG-Coenzyme-A Reductase Gene Variation to Evaluate the Association of Statin-Induced Low-Density Lipoprotein Cholesterol Lowering With Noncardiovascular Disease Phenotypes.	JAMA Netw Open	2021
34061827	High-throughput framework forÂ genetic analyses of adverse drug reactions using electronic health records.	PLoS Genet	2021
34283806	Systemic inhibition of PTPN22 augments anticancer immunity.	J Clin Invest	2021

1 - 50 of 420

Andrew Wen

Mayo Clinic

Career Start Year 2017

Number of shared co-authors 20

Zhaoyi Chen

University of Florida

Career Start Year 2017

Number of shared co-authors 10

Brett K Beaulieu-Jones

University of Chicago

Career Start Year 2016

Number of shared co-authors 20

Juan M Banda

Georgia State University

Career Start Year 2016

Number of shared co-authors 16

Sijia Liu

Mayo Clinic, University at Buffalo - North Campus

Career Start Year 2016

Number of shared co-authors 27

Simon Lin

The Abigail Wexner Research Institute, Nationwide Children's Hospital

Career Start Year 2015

Number of shared co-authors 1

Emily R Pfaff

University of North Carolina

Career Start Year 2014

Number of shared co-authors 18

Jitendra Jonnagaddala

NMC Royal Hospital

Career Start Year 2014

Number of shared co-authors 14

Benjamin S Glicksberg

Hasso Plattner Institute for Digital Health, Icahn School of Medicine at Mount Sinai

Career Start Year 2013

Number of shared co-authors 27

Feichen Shen

Shanghai Polytechnic University

Career Start Year 2012

Number of shared co-authors 22

Jason L Ross

Mayo Clinic

Career Start Year 2011

Number of shared co-authors 22

Jihoon Kim

university of california san diego

Career Start Year 2009

Number of shared co-authors 10

Kavishwar B Wagholikar

Massachusetts General Hospital

Career Start Year 2009

Number of shared co-authors 19

Wade Schulz (CM4AI)

Yale University

Career Start Year 2008

Number of shared co-authors 5

Spiros Denaxas

Institute of Health Informatics, University College London

Career Start Year 2008

Number of shared co-authors 44

Matthias Samwald

Institute of Artificial Intelligence, Medical University of Vienna

Career Start Year 2007

Number of shared co-authors 6

Paul Avillach

Harvard Medical School

Career Start Year 2007

Number of shared co-authors 32

Jessica D Tenenbaum

Duke University

Career Start Year 2006

Number of shared co-authors 24

Adler Perotte

Columbia University

Career Start Year 2005

Number of shared co-authors 21

Jomol Mathew

University of Wisconsin-Madison

Career Start Year 2004

Number of shared co-authors 4

Shyam Visweswaran

University of Pittsburgh

Career Start Year 2003

Number of shared co-authors 28

Philip R O Payne

Institute for Informatics, Washington University School of Medicine in St. Louis

Career Start Year 2003

Number of shared co-authors 24

Richard J B Dobson

Institute of Psychiatry, King's College London

Career Start Year 2002

Number of shared co-authors 35

Javed Mostafa

University of North Carolina at Chapel Hill

Career Start Year 2001

Number of shared co-authors 2

Griffin M Weber

Harvard Medical School

Career Start Year 2001

Number of shared co-authors 27

John F Hurdle

University of Utah

Career Start Year 1996

Number of shared co-authors 6

Antoine Neuraz

INSERM UMR 3, Universite Paris Cite, Imagine Institute

Career Start Year 1994

Number of shared co-authors 11

Atul J Butte

Bakar Computational Health Sciences Institute, University of California san francisco

Career Start Year 1993

Number of shared co-authors 45

William R Hogan

College of Medicine, University of Florida

Career Start Year 1990

Number of shared co-authors 24

Peter L Elkin

Jacobs School of Medicine and Biomedical Sciences, University at Buffalo

Career Start Year 1985

Number of shared co-authors 33

row(s) 1 - 30 of 30

Dan M Roden

Vanderbilt University Medical Center

Co-authored papers 152

Lisa Bastarache

Vanderbilt University Medical Center

Co-authored papers 72

Marylyn D Ritchie

Center for Systems Genomics, Pennsylvania State University, University Park

Co-authored papers 63

Gail P Jarvik

University of Washington Medical Center

Co-authored papers 61

Iftikhar J Kullo

Mayo Clinic

Co-authored papers 59

Hua Xu

Yale University

Co-authored papers 55

Wei-Qi Wei

Vanderbilt University Medical Center

Co-authored papers 54

David R Crosslin

University of Washington Medical Center

Co-authored papers 52

Jennifer A Pacheco

University of Pennsylvania

Co-authored papers 48

Peggy L Peissig

Center for Precision Medicine Research, Marshfield Clinic Research Institute

Co-authored papers 47

Eric B Larson

University of Washington

Co-authored papers 44

Robert J Carroll

Vanderbilt University Medical Center

Co-authored papers 41

Christian M Shaffer

Vanderbilt University

Co-authored papers 39

David S Carrell

Kaiser Permanente Washington Health Research Institute

Co-authored papers 39

Abel N Kho

Northwestern University Feinberg School of Medicine

Co-authored papers 38

Josh F Peterson

Vanderbilt University Medical Center

Co-authored papers 36

Dana C Crawford

Cleveland Institute for Computational Biology, Case Western Reserve University

Co-authored papers 36

Jyotishman Pathak

Cornell University

Co-authored papers 35

Jonathan D Mosley

Vanderbilt University Medical Center

Co-authored papers 35

Christopher G Chute

Brown University, Brown University Warren Alpert Medical School, Dartmouth-Hitchcock Medical Center, Harvard School of Public Health, Johns Hopkins Medicine, Mayo Clinic Minnesota

Co-authored papers 34

Erwin P Bottinger

Hasso Plattner Institute for Digital Health at Mount Sinai

Co-authored papers 34

Jill M Pulley

Vanderbilt University School of Medicine

Co-authored papers 32

Melissa A Basford

Vanderbilt University

Co-authored papers 31

Sara L Van Driest

National Institutes of Health