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Author Details

Pjotr Prins
Wageningen University & Research
2001
50
20
PMIDPaper TitleJournal TitlePublished Year
36457296The root-knot nematode effector MiMSP32 targets host 12-oxophytodienoate reductase 2 to regulate plant susceptibility.New Phytol2023
37636268Pangenome graphs in infectious disease: a comprehensive genetic variation analysis of <i>Neisseria meningitidis</i> leveraging Oxford Nanopore long reads.Front Genet2023
37389175Epigenetic analysis in a murine genetic model of Gulf War illness.Front Toxicol2023
37214860A revamped rat reference genome improves the discovery of genetic diversity in laboratory rats.bioRxiv2023
37066137Building pangenome graphs.bioRxiv2023
35182904A systems genetics approach delineates the role of Bcl2 in leukemia pathogenesis.Leuk Res2022
35639788A spectrum of free software tools for processing the VCF variant call format: vcflib, bio-vcf, cyvcf2, hts-nim and slivar.PLoS Comput Biol2022
35552372ODGI: understanding pangenome graphs.Bioinformatics2022
35285473GeneCup: mining PubMed and GWAS catalog for gene-keyword relationships.G3 (Bethesda)2022
33472028A platform for experimental precision medicine: The extended BXD mouse family.Cell Syst2021
34499130Speeding up eQTL scans in the BXD population using GPUs.G3 (Bethesda)2021
34367237Genetic Modulation of Initial Sensitivity to ο9-Tetrahydrocannabinol (THC) Among the BXD Family of Mice.Front Genet2021
33472826Highlights from the Era of Open Source Web-Based Tools.J Neurosci2021
32379758Ten simple rules to run a successful BioHackathon.PLoS Comput Biol2020
32308977BioHackathon 2015: Semantics of data for life sciences and reproducible research.F1000Res2020
32327562Private Genomes and Public SNPs: Homomorphic Encryption of Genotypes and Phenotypes for Shared Quantitative Genetics.Genetics2020
30591514R/qtl2: Software for Mapping Quantitative Trait Loci with High-Dimensional Data and Multiparent Populations.Genetics2019
31340200The molecular genetic make-up of male breast cancer.Endocr Relat Cancer2019
31278684Sharing Programming Resources Between Bio* Projects.Methods Mol Biol2019
31278683Scalable Workflows and Reproducible Data Analysis for Genomics.Methods Mol Biol2019
31278680Systems Genetics for Evolutionary Studies.Methods Mol Biol2019
29199021An Integrated Systems Genetics and Omics Toolkit to Probe Gene Function.Cell Syst2018
32704456Journal of Open Source Software (JOSS): design and first-year review.PeerJ Prepr2018
30319684Genetic Contribution to Initial and Progressive Alcohol Intake Among Recombinant Inbred Strains of Mice.Front Genet2018
27995664AraQTL - workbench and archive for systems genetics in Arabidopsis thaliana.Plant J2017
27933521GeneNetwork: A Toolbox for Systems Genetics.Methods Mol Biol2017
27698416Tissue-specific mutation accumulation in human adult stem cells during life.Nature2016
25697820Sambamba: fast processing of NGS alignment formats.Bioinformatics2015
26510153Transcriptional and Linkage Analyses Identify Loci that Mediate the Differential Macrophage Response to Inflammatory Stimuli and Infection.PLoS Genet2015
26154002Toward effective software solutions for big biology.Nat Biotechnol2015
24495517BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains.J Biomed Semantics2014
25472764Community-driven development for computational biology at Sprints, Hackathons and Codefests.BMC Bioinformatics2014
23398680The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies.J Biomed Semantics2013
23445565Fast probabilistic file fingerprinting for big data.BMC Genomics2013
22399471Genetical genomics for evolutionary studies.Methods Mol Biol2012
22308096xQTL workbench: a scalable web environment for multi-level QTL analysis.Bioinformatics2012
22396485Bioinformatics tools and database resources for systems genetics analysis in mice--a short review and an evaluation of future needs.Brief Bioinform2012
22332238Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics.Bioinformatics2012
22399474Scalable computing for evolutionary genomics.Methods Mol Biol2012
22399473Sharing programming resources between Bio* projects through remote procedure call and native call stack strategies.Methods Mol Biol2012
21301471Big data, but are we ready?Nat Rev Genet2011
21838868Identification of imprinted genes subject to parent-of-origin specific expression in Arabidopsis thaliana seeds.BMC Plant Biol2011
21590328A genome-wide genetic map of NB-LRR disease resistance loci in potato.Theor Appl Genet2011
20966004R/qtl: high-throughput multiple QTL mapping.Bioinformatics2010
20727200The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. The DBCLS BioHackathon Consortium*.J Biomed Semantics2010
20739307BioRuby: bioinformatics software for the Ruby programming language.Bioinformatics2010
19245327A secreted SPRY domain-containing protein (SPRYSEC) from the plant-parasitic nematode Globodera rostochiensis interacts with a CC-NB-LRR protein from a susceptible tomato.Mol Plant Microbe Interact2009
16264226Linking cDNA-AFLP-based gene expression patterns and ESTs.Methods Mol Biol2006
17196041Mapping determinants of gene expression plasticity by genetical genomics in C. elegans.PLoS Genet2006
11266565GenEST, a powerful bidirectional link between cDNA sequence data and gene expression profiles generated by cDNA-AFLP.Nucleic Acids Res2001
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Collaborators

Toshiaki Katayama
Database Center for Life Science
Co-authored papers 10
Robert W Williams
Mayo Clinic
Co-authored papers 10
Raoul J P Bonnal
National Institute for Molecular Genetics "Romeo ed Enrica Invernizzi"
Co-authored papers 8
Megan K Mulligan
University of Tennessee Health Science Center.
Co-authored papers 6
Steffen M??ller
Rostock University Medical Center
Co-authored papers 5
Rutger A Vos
Naturalis Biodiversity Center
Co-authored papers 5
Jan Aerts
Co-authored papers 5
Yasunori Yamamoto
Database Center for Life Science, Joint Support-Center for Data Science Research
Co-authored papers 4
Mark D Wilkinson
Universidad Politecnica de Madrid (UPM)
Co-authored papers 4
Edwin Cuppen
Hartwig Medical Foundation
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Karl W Broman
Co-authored papers 4
Francesco Strozzi
Fondazione Parco Tecnologico Padano
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Shuichi Kawashima
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Co-authored papers 4
Erick Antezana
Norwegian University of Science and Technology
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Tohoku University Graduate School of Medicine
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Lu Lu
University of Tennessee Health Science Center
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Jerven Bolleman
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Bruno Aranda
European Bioinformatics Institute
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Peter J A Cock
James Hutton Institute
Co-authored papers 3
Christian M Zmasek
J. Craig Venter Institute
Co-authored papers 3
Christopher J Fields
University of Illinois Urbana-Champaign
Co-authored papers 2
Issaku Yamada
Co-authored papers 2
Hidemasa Bono
Hiroshima University
Co-authored papers 2
Richard Holland
Eagle Genomics Ltd
Co-authored papers 2
René Ranzinger
Co-authored papers 2
Roman Valls Guimera
University of Melbourne
Co-authored papers 2
Robert Hoehndorf
King Abdullah University of Science and Technology
Co-authored papers 2
Mat???? Kala??
University of Bergen
Co-authored papers 2
William S York
Co-authored papers 2
Kiyoko F Aoki-Kinoshita
Co-authored papers 2
Release 1.2