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Author Details

Jianlin Cheng
University of Missouri
2005
198
45
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36798459Geometry-Complete Diffusion for 3D Molecule Generation and Optimization.ArXiv2024
37873264Accurate cryo-EM protein particle picking by integrating the foundational AI image segmentation model and specialized U-Net.bioRxiv2024
36798459Geometry-Complete Diffusion for 3D Molecule Generation and Optimization.ArXiv2024
37873264Accurate cryo-EM protein particle picking by integrating the foundational AI image segmentation model and specialized U-Net.bioRxiv2024
36307986Genomic imbalance modulates transposable element expression in maize.Plant Commun2023
36307986Genomic imbalance modulates transposable element expression in maize.Plant Commun2023
37949999Enhancing alphafold-multimer-based protein complex structure prediction with MULTICOM in CASP15.Commun Biol2023
37679431Improving AlphaFold2-based protein tertiary structure prediction with MULTICOM in CASP15.Commun Chem2023
37596303Crystal structure of domain of unknown function 507 (DUF507) reveals a new protein fold.Sci Rep2023
37589594Predicted structural proteome of Sphagnum divinum and proteome-scale annotation.Bioinformatics2023
37905971Impact of AlphaFold on structure prediction of protein complexes: The CASP15-CAPRI experiment.Proteins2023
37873289Accurate prediction of protein tertiary structural changes induced by single-site mutations with equivariant graph neural networks.bioRxiv2023
37961171CryoTransformer: A Transformer Model for Picking Protein Particles from Cryo-EM Micrographs.bioRxiv2023
37144951Atomic protein structure refinement using all-atom graph representations and SE(3)-equivariant graph transformer.Bioinformatics2023
36773336Deep learning for reconstructing protein structures from cryo-EM density maps: Recent advances and future directions.Curr Opin Struct Biol2023
36711471Combining protein sequences and structures with transformers and equivariant graph neural networks to predict protein function.bioRxiv2023
37014740Dissection of a Down syndrome-associated trisomy to separate the gene dosage-dependent and -independent effects of an extra chromosome.Hum Mol Genet2023
366371993D-equivariant graph neural networks for protein model quality assessment.Bioinformatics2023
36945536Combining pairwise structural similarity and deep learning interface contact prediction to estimate protein complex model accuracy in CASP15.bioRxiv2023
37387159A gated graph transformer for protein complex structure quality assessment and its performance in CASP15.Bioinformatics2023
36479703High-throughput identification of novel heat tolerance genes via genome-wide pooled mutant screens in the model green alga Chlamydomonas reinhardtii.Plant Cell Environ2023
36865277CryoPPP: A Large Expert-Labelled Cryo-EM Image Dataset for Machine Learning Protein Particle Picking.bioRxiv2023
37357816Combining pairwise structural similarity and deep learning interface contact prediction to estimate protein complex model accuracy in CASP15.Proteins2023
36671518Improving Protein-Ligand Interaction Modeling with cryo-EM Data, Templates, and Deep Learning in 2021 Ligand Model Challenge.Biomolecules2023
37293073Enhancing AlphaFold-Multimer-based Protein Complex Structure Prediction with MULTICOM in CASP15.bioRxiv2023
37537186DIPS-Plus: The enhanced database of interacting protein structures for interface prediction.Sci Data2023
37498561Single-cell Hi-C data enhancement with deep residual and generative adversarial networks.Bioinformatics2023
37349345A large expert-curated cryo-EM image dataset for machine learning protein particle picking.Sci Data2023
37596303Crystal structure of domain of unknown function 507 (DUF507) reveals a new protein fold.Sci Rep2023
37961171CryoTransformer: A Transformer Model for Picking Protein Particles from Cryo-EM Micrographs.bioRxiv2023
37905971Impact of AlphaFold on structure prediction of protein complexes: The CASP15-CAPRI experiment.Proteins2023
37589594Predicted structural proteome of Sphagnum divinum and proteome-scale annotation.Bioinformatics2023
37949999Enhancing alphafold-multimer-based protein complex structure prediction with MULTICOM in CASP15.Commun Biol2023
37498561Single-cell Hi-C data enhancement with deep residual and generative adversarial networks.Bioinformatics2023
37873289Accurate prediction of protein tertiary structural changes induced by single-site mutations with equivariant graph neural networks.bioRxiv2023
37679431Improving AlphaFold2-based protein tertiary structure prediction with MULTICOM in CASP15.Commun Chem2023
37537186DIPS-Plus: The enhanced database of interacting protein structures for interface prediction.Sci Data2023
37387159A gated graph transformer for protein complex structure quality assessment and its performance in CASP15.Bioinformatics2023
37349345A large expert-curated cryo-EM image dataset for machine learning protein particle picking.Sci Data2023
37014740Dissection of a Down syndrome-associated trisomy to separate the gene dosage-dependent and -independent effects of an extra chromosome.Hum Mol Genet2023
36945536Combining pairwise structural similarity and deep learning interface contact prediction to estimate protein complex model accuracy in CASP15.bioRxiv2023
37144951Atomic protein structure refinement using all-atom graph representations and SE(3)-equivariant graph transformer.Bioinformatics2023
37357816Combining pairwise structural similarity and deep learning interface contact prediction to estimate protein complex model accuracy in CASP15.Proteins2023
37293073Enhancing AlphaFold-Multimer-based Protein Complex Structure Prediction with MULTICOM in CASP15.bioRxiv2023
36479703High-throughput identification of novel heat tolerance genes via genome-wide pooled mutant screens in the model green alga Chlamydomonas reinhardtii.Plant Cell Environ2023
36711471Combining protein sequences and structures with transformers and equivariant graph neural networks to predict protein function.bioRxiv2023
36773336Deep learning for reconstructing protein structures from cryo-EM density maps: Recent advances and future directions.Curr Opin Struct Biol2023
366371993D-equivariant graph neural networks for protein model quality assessment.Bioinformatics2023
36671518Improving Protein-Ligand Interaction Modeling with cryo-EM Data, Templates, and Deep Learning in 2021 Ligand Model Challenge.Biomolecules2023
36865277CryoPPP: A Large Expert-Labelled Cryo-EM Image Dataset for Machine Learning Protein Particle Picking.bioRxiv2023
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Collaborators

Jie Hou
Saint Louis University
Co-authored papers 45
Jilong Li
Qiagen Inc.
Co-authored papers 28
Renzhi Cao
Pacific Lutheran University
Co-authored papers 24
Zheng Wang
University of Miami
Co-authored papers 21
Dong Xu
University of Missouri
Co-authored papers 9
Daisuke Kihara
Purdue University
Co-authored papers 6
Shoshana J Wodak
VIB-VUB Center for Structural Biology
Co-authored papers 3
Michael L Tress
Spanish National Cancer Research Centre (CNIO)
Co-authored papers 3
Haixuan Yang
University of Galway
Co-authored papers 3
Sean D Mooney
University of Washington
Co-authored papers 3
Hai Fang
University of Bristol
Co-authored papers 3
Stefano Toppo
University of Padova
Co-authored papers 3
Patricia C Babbitt
University of California san francisco
Co-authored papers 3
Asa Ben-Hur
Colorado State University
Co-authored papers 3
Michal Linial
Institute of Life Sciences, The Hebrew University of Jerusalem
Co-authored papers 3
Adam Liwo
Co-authored papers 3
Iddo Friedberg
Iowa State University
Co-authored papers 3
David T Jones
University College London
Co-authored papers 3
Steven E Brenner
University of California berkeley
Co-authored papers 3
Xiaoqin Zou
Dalton Cardiovascular Research Center, University of Missouri
Co-authored papers 3
Liam J McGuffin
University of Reading
Co-authored papers 3
David Baker
University of Washington
Co-authored papers 3
Brian Jim??nez-Garc??a
Utrecht University
Co-authored papers 3
Rita Casadio
Department of Pharmacy and Biotechnology, University of Bologna
Co-authored papers 3
Burkhard Rost
Technical University of Munich (TUM)
Co-authored papers 3
Dmitri Beglov
Boston University
Co-authored papers 3
Kliment Olechnovič
Co-authored papers 3
Paweſ Krupa
Co-authored papers 3
Domenico Cozzetto
Imperial College London
Co-authored papers 3
Prajwal Bhat
Royal Holloway University of London
Co-authored papers 3
Release 1.2