Skip to Main Content

Author Details

Kim Rutherford
University of Cambridge
2000
61
37
PMIDPaper TitleJournal TitlePublished Year
36866529The Gene Ontology knowledgebase in 2023.Genetics2023
37758508Revised fission yeast gene and allele nomenclature guidelines for machine readability.Genetics2023
37401199A framework for community curation of interspecies interactions literature.Elife2023
34788826PHI-base in 2022: a multi-species phenotype database for Pathogen-Host Interactions.Nucleic Acids Res2022
35380656JaponicusDB: rapid deployment of a model organism database for an emerging model species.Genetics2022
35100366Fission stories: using PomBase to understand Schizosaccharomyces pombe biology.Genetics2022
33305388A genome-wide investigation of adaptive signatures in protein-coding genes related to tool behaviour in New Caledonian and Hawaiian crows.Mol Ecol2021
33833441Author Correction: Dense sampling of bird diversity increases power of comparative genomics.Nature2021
33974954Taxonomic annotation of 16S rRNA sequences of pig intestinal samples using MG-RAST and QIIME2 generated different microbiota compositions.J Microbiol Methods2021
32353878Community curation in PomBase: enabling fission yeast experts to provide detailed, standardized, sharable annotation from research publications.Database (Oxford)2020
31733065PHI-base: the pathogen-host interactions database.Nucleic Acids Res2020
33177665Dense sampling of bird diversity increases power of comparative genomics.Nature2020
32821530DNA from mollusc shell: a valuable and underutilised substrate for genetic analyses.PeerJ2020
32875947Term Matrix: a novel Gene Ontology annotation quality control system based on ontology term co-annotation patterns.Open Biol2020
30321395PomBase 2018: user-driven reimplementation of the fission yeast database provides rapid and intuitive access to diverse, interconnected information.Nucleic Acids Res2019
31309157Stress, novel sex genes, and epigenetic reprogramming orchestrate socially controlled sex change.Sci Adv2019
30938578Hidden in plain sight: what remains to be discovered in the eukaryotic proteome?Open Biol2019
29136184Female Mimicry by Sneaker Males Has a Transcriptomic Signature in Both the Brain and the Gonad in a Sex-Changing Fish.Mol Biol Evol2018
30271541Reduced representation sequencing detects only subtle regional structure in a heavily exploited and rapidly recolonizing marine mammal species.Ecol Evol2018
29615780De novo draft assembly of the Botrylloides leachii genome provides further insight into tunicate evolution.Sci Rep2018
29443461Genetic sex assignment in wild populations using genotyping-by-sequencing data: A statistical threshold approach.Mol Ecol Resour2018
29625017Adipose transcriptome analysis provides novel insights into molecular regulation of prolonged fasting in northern elephant seal pups.Physiol Genomics2018
29761456PomBase: The Scientific Resource for Fission Yeast.Methods Mol Biol2018
29272338Identification of sex differences in zebrafish (Danio rerio) brains during early sexual differentiation and masculinization using 17α-methyltestoterone.Biol Reprod2018
27915230PHI-base: a new interface and further additions for the multi-species pathogen-host interactions database.Nucleic Acids Res2017
29041914Analysis of the genome of the New Zealand giant collembolan (Holacanthella duospinosa) sheds light on hexapod evolution.BMC Genomics2017
28747474Male-female relatedness at specific SNP-linkage groups influences cryptic female choice in Chinook salmon (<i>Oncorhynchus tshawytscha</i>).Proc Biol Sci2017
28738802Histological and transcriptomic effects of 17α-methyltestosterone on zebrafish gonad development.BMC Genomics2017
26879048Uncovering the pathways underlying whole body regeneration in a chordate model, Botrylloides leachi using de novo transcriptome analysis.BMC Genomics2016
25361970PomBase 2015: updates to the fission yeast database.Nucleic Acids Res2015
26613014Large-scale transcriptome sequencing reveals novel expression patterns for key sex-related genes in a sex-changing fish.Biol Sex Differ2015
24574118Canto: an online tool for community literature curation.Bioinformatics2014
25540158Molecular evolution of Dmrt1 accompanies change of sex-determining mechanisms in reptilia.Biol Lett2014
24929579Improving functional annotation for industrial microbes: a case study with Pichia pastoris.Trends Biotechnol2014
23161678Gene Ontology annotations and resources.Nucleic Acids Res2013
22039153PomBase: a comprehensive online resource for fission yeast.Nucleic Acids Res2012
23023984InterMine: a flexible data warehouse system for the integration and analysis of heterogeneous biological data.Bioinformatics2012
22080565modMine: flexible access to modENCODE data.Nucleic Acids Res2012
21177976Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project.Science2010
17615057FlyMine: an integrated database for Drosophila and Anopheles genomics.Genome Biol2007
15637271A comprehensive survey of the Plasmodium life cycle by genomic, transcriptomic, and proteomic analyses.Science2005
15976072ACT: the Artemis Comparison Tool.Bioinformatics2005
16076890WebACT--an online companion for the Artemis Comparison Tool.Bioinformatics2005
16103911A human-curated annotation of the Candida albicans genome.PLoS Genet2005
14681429GeneDB: a resource for prokaryotic and eukaryotic organisms.Nucleic Acids Res2004
15213324Complete genomes of two clinical Staphylococcus aureus strains: evidence for the rapid evolution of virulence and drug resistance.Proc Natl Acad Sci U S A2004
15377794Genomic plasticity of the causative agent of melioidosis, Burkholderia pseudomallei.Proc Natl Acad Sci U S A2004
12846394Viewing and annotating sequence data with Artemis.Brief Bioinform2003
12907729The DNA sequence of chromosome I of an African trypanosome: gene content, chromosome organisation, recombination and polymorphism.Nucleic Acids Res2003
14602910The complete genome sequence and analysis of Corynebacterium diphtheriae NCTC13129.Nucleic Acids Res2003
  • 1 - 50 of 61

Recommended Authors

Spanish National Bioinformatics Institute (INB/ELIXIR-ES)
Career Start Year 2009
Number of shared co-authors 18
University of Colorado Anschutz Medical Campus
Career Start Year 2007
Number of shared co-authors 23
University of Illinois Urbana-Champaign
Career Start Year 2005
Number of shared co-authors 3
Institute for Genome Sciences, University of Maryland School of Medicine
Career Start Year 2004
Number of shared co-authors 18
Catalan Institution for Research and Advanced Studies
Career Start Year 2003
Number of shared co-authors 27
Leiden University, Institute of Biology Leiden
Career Start Year 2003
Number of shared co-authors 2
Harvard T.H. Chan School of Public Health
Career Start Year 2003
Number of shared co-authors 5
Indiana University
Career Start Year 2002
Number of shared co-authors 10
Universitat de Barcelona (UB)
Career Start Year 2001
Number of shared co-authors 9
Lawrence Berkeley National Laboratory
Career Start Year 2001
Number of shared co-authors 6
University of Barcelona
Career Start Year 2000
Number of shared co-authors 25
National Marine Biodiversity Institute of Korea
Career Start Year 2000
Number of shared co-authors 2
Smurfit Institute of Genetics, Trinity College of Dublin
Career Start Year 1999
Number of shared co-authors 11
Broad Institute of MIT and Harvard
Career Start Year 1999
Number of shared co-authors 77
GE Global Research Center
Career Start Year 1999
Number of shared co-authors 30
University of California davis
Career Start Year 1999
Number of shared co-authors 8
Biomedicine Discovery Institute, Monash University
Career Start Year 1998
Number of shared co-authors 2
Institute for Genome Sciences, University of Maryland School of Medicine
Career Start Year 1998
Number of shared co-authors 33
University of Geneva Medical School
Career Start Year 1995
Number of shared co-authors 13
Garvan Institute of Medical Research
Career Start Year 1994
Number of shared co-authors 17
Scripps Institution of Oceanography, University of California San Diego
Career Start Year 1994
Number of shared co-authors 7
The Hospital for Sick Children
Career Start Year 1994
Number of shared co-authors 18
Aix Marseille University, CNRS, Turing Center for Living Systems
Career Start Year 1993
Number of shared co-authors 2
European Bioinformatics Institute
Career Start Year 1992
Number of shared co-authors 54
Radboud University Medical Centre Nijmegen
Career Start Year 1992
Number of shared co-authors 6
US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory
Career Start Year 1991
Number of shared co-authors 20
University of Wurzburg
Career Start Year 1989
Number of shared co-authors 49
Broad Institute of MIT and Harvard
Career Start Year 1983
Number of shared co-authors 32
Broad Institute of MIT and Harvard
Career Start Year 1981
Number of shared co-authors 33
James Hutton Institute
Career Start Year 1974
Number of shared co-authors 5

Collaborators

University of Cambridge
Co-authored papers 19
Wellcome Trust Sanger Institute
Co-authored papers 18
University College London
Co-authored papers 11
University of Cambridge
Co-authored papers 11
Wellcome Trust Sanger Institute
Co-authored papers 10
University of Cambridge
Co-authored papers 8
Wellcome Sanger Institute
Co-authored papers 8
University College London
Co-authored papers 7
Rothamsted Research
Co-authored papers 5
Earlham Institute
Co-authored papers 5
Lawrence Berkeley National Laboratory
Co-authored papers 4
International Society for Biocuration, Lawrence Berkeley National Laboratory, University of Edinburgh, University of Edinburgh School of Biological Sciences
Co-authored papers 4
European Bioinformatics Institute
Co-authored papers 4
The Francis Crick Institute
Co-authored papers 3
King Abdullah University of Science and Technology
Co-authored papers 3
NRC Institute for Marine Biosciences
Co-authored papers 3
University College London, Institute for Cardiovascular Science
Co-authored papers 3
European Bioinformatics Institute
Co-authored papers 3
carnegie mellon university - 1 rue Michel Servet CH-1 Geneva 4
Co-authored papers 3
Stanford University
Co-authored papers 3
University of Geneva
Co-authored papers 3
Co-authored papers 3
Edinburgh Clinical Research Facility, University of Edinburgh
Co-authored papers 3
California Institute of Technology
Co-authored papers 3
Lawrence Berkeley National Laboratory
Co-authored papers 3
European Bioinformatics Institute
Co-authored papers 3
carnegie mellon university
Co-authored papers 3
Wellcome Sanger Institute
Co-authored papers 2
Center for Genetic Medicine, Northwestern University.
Co-authored papers 2
Institute of Clinical Molecular Biology, Kiel University
Co-authored papers 2