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Author Details

Ljiljana Pa??a-Toli??
Pacific Northwest National Laboratory
1994
222
58
Leah V Schaffer (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36603806Spatially Resolved Top-Down Proteomics of Tissue Sections Based on a Microfluidic Nanodroplet Sample Preparation Platform.Mol Cell Proteomics2023
37966872Natural Abundance Isotope Ratio Measurements of Organic Molecules Using 21 T FTICR MS.Anal Chem2023
37523489<i>IsoMatchMS</i>: Open-Source Software for Automated Annotation and Visualization of High Resolution MALDI-MS Spectra.J Am Soc Mass Spectrom2023
37674709Top-down mass spectrometry of native proteoforms and their complexes: A community study.Res Sq2023
37427698Experimental Assessment of Mammalian Lipidome Complexity Using Multimodal 21 T FTICR Mass Spectrometry Imaging.Anal Chem2023
36622763193 nm Ultraviolet Photodissociation for the Characterization of Singly Charged Proteoforms Generated by MALDI.J Am Soc Mass Spectrom2023
35167251Imaging and Direct Sampling Capabilities of Nanospray Desorption Electrospray Ionization with Absorption-Mode 21 Tesla Fourier Transform Ion Cyclotron Resonance Mass Spectrometry.Anal Chem2022
36371691Large-Scale Interlaboratory DI-FT-ICR MS Comparability Study Employing Various Systems.J Am Soc Mass Spectrom2022
36067026Enhanced Spatial Mapping of Histone Proteoforms in Human Kidney Through MALDI-MSI by High-Field UHMR-Orbitrap Detection.Anal Chem2022
36288343First comprehensive identification of cardiac proteins with putative increased O-GlcNAc levels during pressure overload hypertrophy.PLoS One2022
35064110Activation of the plant mevalonate pathway by extracellular ATP.Nat Commun2022
35298923Three-dimensional feature matching improves coverage for single-cell proteomics based on ion mobility filtering.Cell Syst2022
32929206Proteome specialization of anaerobic fungi during ruminal degradation of recalcitrant plant fiber.ISME J2021
33643238Mechanisms of Manganese(II) Oxidation by Filamentous Ascomycete Fungi Vary With Species and Time as a Function of Secretome Composition.Front Microbiol2021
33749685Isolation of Histone from Sorghum Leaf Tissue for Top Down Mass Spectrometry Profiling of Potential Epigenetic Markers.J Vis Exp2021
33856812Enhancing Top-Down Proteomics of Brain Tissue with FAIMS.J Proteome Res2021
34588474Interactions between microbial diversity and substrate chemistry determine the fate of carbon in soil.Sci Rep2021
34716329High-throughput and high-efficiency sample preparation for single-cell proteomics using a nested nanowell chip.Nat Commun2021
34848696Author Correction: High-throughput and high-efficiency sample preparation for single-cell proteomics using a nested nanowell chip.Nat Commun2021
34767442The Human Proteoform Project: Defining the human proteome.Sci Adv2021
34043287Cell-Type-Specific Proteomics Analysis of a Small Number of Plant Cells by Integrating Laser Capture Microdissection with a Nanodroplet Sample Processing Platform.Curr Protoc2021
34113365New Insights Into Lignification via Network and Multi-Omics Analyses of Arogenate Dehydratase Knock-Out Mutants in <i>Arabidopsis thaliana</i>.Front Plant Sci2021
34165968An Improved Top-Down Mass Spectrometry Characterization of <i>Chlamydomonas reinhardtii</i> Histones and Their Post-translational Modifications.J Am Soc Mass Spectrom2021
33402348Metabolic Interactions between <i>Brachypodium</i> and Pseudomonas fluorescens under Controlled Iron-Limited Conditions.mSystems2021
31544655In-Situ Metabolomic Analysis of <i>Setaria viridis</i> Roots Colonized by Beneficial Endophytic Bacteria.Mol Plant Microbe Interact2020
34094482Higher-order structural characterisation of native proteins and complexes by top-down mass spectrometry.Chem Sci2020
31655121Top-down mass spectrometry of histone modifications in sorghum reveals potential epigenetic markers for drought acclimation.Methods2020
33302437Mapping Influenza-Induced Posttranslational Modifications on Histones from CD8+ T Cells.Viruses2020
32639140Automated Coupling of Nanodroplet Sample Preparation with Liquid Chromatography-Mass Spectrometry for High-Throughput Single-Cell Proteomics.Anal Chem2020
32897710Storage Conditions of Human Kidney Tissue Sections Affect Spatial Lipidomics Analysis Reproducibility.J Am Soc Mass Spectrom2020
32812765Interlaboratory Study for Characterizing Monoclonal Antibodies by Top-Down and Middle-Down Mass Spectrometry.J Am Soc Mass Spectrom2020
32410239Metabolomic profiling of wild-type and mutant soybean root nodules using laser-ablation electrospray ionization mass spectrometry reveals altered metabolism.Plant J2020
32374172Sensitive Top-Down Proteomics Analysis of a Low Number of Mammalian Cells Using a Nanodroplet Sample Processing Platform.Anal Chem2020
32127492An Improved Boosting to Amplify Signal with Isobaric Labeling (iBASIL) Strategy for Precise Quantitative Single-cell Proteomics.Mol Cell Proteomics2020
32126772Response Surface Methodology As a New Approach for Finding Optimal MALDI Matrix Spraying Parameters for Mass Spectrometry Imaging.J Am Soc Mass Spectrom2020
32314907Single-Cell Metabolic Profiling: Metabolite Formulas from Isotopic Fine Structures in Heterogeneous Plant Cell Populations.Anal Chem2020
30649631Atmo-ecometabolomics: a novel atmospheric particle chemical characterization methodology for ecological research.Environ Monit Assess2019
31384874Dealing with complexity: general discussion.Faraday Discuss2019
31373341Data mining and visualisation: general discussion.Faraday Discuss2019
31451767A five-level classification system for proteoform identifications.Nat Methods2019
31369012High resolution techniques: general discussion.Faraday Discuss2019
31509397High-Throughput Single Cell Proteomics Enabled by Multiplex Isobaric Labeling in a Nanodroplet Sample Preparation Platform.Anal Chem2019
31249407Best practices and benchmarks for intact protein analysis for top-down mass spectrometry.Nat Methods2019
31155623Online supercritical fluid extraction mass spectrometry (SFE-LC-FTMS) for sensitive characterization of soil organic matter.Faraday Discuss2019
30821434Ambient Metabolic Profiling and Imaging of Biological Samples with Ultrahigh Molecular Resolution Using Laser Ablation Electrospray Ionization 21 Tesla FTICR Mass Spectrometry.Anal Chem2019
30427023Siderophore profiling of co-habitating soil bacteria by ultra-high resolution mass spectrometry.Metallomics2019
29210566Multimodal MSI in Conjunction with Broad Coverage Spatially Resolved MS<sup>2</sup> Increases Confidence in Both Molecular Identification and Localization.Anal Chem2018
30226781Increasing the Separation Capacity of Intact Histone Proteoforms Chromatography Coupling Online Weak Cation Exchange-HILIC to Reversed Phase LC UVPD-HRMS.J Proteome Res2018
29899508Observed metabolic asymmetry within soybean root nodules reflects unexpected complexity in rhizobacteria-legume metabolite exchange.ISME J2018
29899368Author Correction: Informed-Proteomics: open-source software package for top-down proteomics.Nat Methods2018
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Collaborators

Richard D Smith
Pacific Northwest National Laboratory
Co-authored papers 94
Gordon A Anderson
Co-authored papers 41
Si Wu
The Fourth Hospital of Hebei Medical University
Co-authored papers 38
Rui Zhao
Co-authored papers 31
Mary S Lipton
Pacific Northwest National Laboratory
Co-authored papers 31
Ronald J Moore
Co-authored papers 27
Mowei Zhou
Co-authored papers 20
Christopher R Anderton
Pacific Northwest National Laboratory
Co-authored papers 15
Samuel O Purvine
Pacific Northwest National Laboratory
Co-authored papers 12
Xiaowen Liu
Tulane Center for Biomedical Informatics and Genomics, Tulane University
Co-authored papers 9
Rosalie K Chu
Co-authored papers 9
Aleksey V Tolmachev
Co-authored papers 9
David G Camp
Co-authored papers 8
Matthew E Monroe
Pacific Northwest National Laboratory
Co-authored papers 8
Wei-Jun Qian
Co-authored papers 8
Tao Liu
Pacific Northwest National Laboratory
Co-authored papers 8
Pavel A Pevzner
University of California
Co-authored papers 8
Erika M Zink
Pacific Northwest National Laboratory
Co-authored papers 7
Joshua N Adkins
Co-authored papers 7
Neil L Kelleher
Northwestern University
Co-authored papers 7
Charles Ansong
Pacific Northwest National Laboratory
Co-authored papers 7
James E Bruce
Co-authored papers 7
Richard Harkewicz
Co-authored papers 6
Anil K Shukla
Pacific Northwest National Laboratory
Co-authored papers 6
Thomas P Conrads
Women's Health Integrated Research Center, Inova Health System
Co-authored papers 6
William B Chrisler
Co-authored papers 6
Ying Ge
University of Wisconsin-Madison
Co-authored papers 6
Joseph A Loo
University of California los angeles
Co-authored papers 6
Vicki H Wysocki
The Ohio State University College of Medicine
Co-authored papers 6
Paul O Danis
Co-authored papers 5
Release 1.2