Author details

Full Name

Peter D Vize

Affiliation

University of Calgary

ORCID

Career Start Year

1986

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36755307	Xenbase: key features and resources of the Xenopus model organism knowledgebase.	Genetics	2023
36603975	A beautiful, complex simplicity: the origins of nephron segmentation uncovered by single-cell sequencing of the pronephros.	Kidney Int	2023
36792746	The case for standardizing gene nomenclature in vertebrates.	Nature	2023
34791383	Echinobase: leveraging an extant model organism database to build a knowledgebase supporting research on the genomics and biology of echinoderms.	Nucleic Acids Res	2022
35551281	Embryonic and aglomerular kidney development in the bay pipefish, Syngnathus leptorhynchus.	PLoS One	2022
35833709	Normal Table of Xenopus development: a new graphical resource.	Development	2022
34010390	Integration of 1:1 orthology maps and updated datasets into Echinobase.	Database (Oxford)	2021
34585729	Classifying domain-specific text documents containing ambiguous keywords.	Database (Oxford)	2021
31733057	Xenbase: deep integration of GEO & SRA RNA-seq and ChIP-seq data in a model organism database.	Nucleic Acids Res	2020
30649320	The Pronephros; a Fresh Perspective.	Integr Comp Biol	2019
31294494	Seasonal temperature, the lunar cycle and diurnal rhythms interact in a combinatorial manner to modulate genomic responses to the environment in a reef-building coral.	Mol Ecol	2019
30863320	Xenbase: Facilitating the Use of <i>Xenopus</i> to Model Human Disease.	Front Physiol	2019
29059324	Xenbase: a genomic, epigenomic and transcriptomic model organism database.	Nucleic Acids Res	2018
32420879	De novo assembly and annotation of the Acropora gemmifera transcriptome.	Mar Genomics	2018
30038485	Distinguishing Species Using GC Contents in Mixed DNA or RNA Sequences.	Evol Bioinform Online	2018
29761462	Navigating Xenbase: An Integrated Xenopus Genomics and Gene Expression Database.	Methods Mol Biol	2018
27039265	Xenopus genomic data and browser resources.	Dev Biol	2017
28141890	Transcriptome dynamics over a lunar month in a broadcast spawning acroporid coral.	Mol Ecol	2017
27132135	Lunar Phase Modulates Circadian Gene Expression Cycles in the Broadcast Spawning Coral Acropora millepora.	Biol Bull	2016
27762356	Genome evolution in the allotetraploid frog Xenopus laevis.	Nature	2016
25313157	Xenbase, the Xenopus model organism database; new virtualized system, data types and genomes.	Nucleic Acids Res	2015
26249149	Model organism databases.	Genesis	2015
26150211	Xenbase: Core features, data acquisition, and data processing.	Genesis	2015
26022975	Database and Informatic Challenges in Representing Both Diploid and Tetraploid Xenopus Species in Xenbase.	Cytogenet Genome Res	2015
25562316	Finding our way through phenotypes.	PLoS Biol	2015
23373983	Staging the self-assembly process: inspiration from biological development.	Artif Life	2014
25330037	Separate introns gained within short and long soluble peridinin-chlorophyll a-protein genes during radiation of Symbiodinium (Dinophyceae) clade A and B lineages.	PLoS One	2014
25380782	The Virtual Xenbase: transitioning an online bioinformatics resource to a private cloud.	Database (Oxford)	2014
23125366	Xenbase: expansion and updates of the Xenopus model organism database.	Nucleic Acids Res	2013
24039807	Ecological complexity of coral recruitment processes: effects of invertebrate herbivores on coral recruitment and growth depends upon substratum properties and coral species.	PLoS One	2013
24139024	Enhanced XAO: the ontology of Xenopus anatomy and development underpins more accurate annotation of gene expression and queries on Xenbase.	J Biomed Semantics	2013
23749471	mRNA fluorescence in situ hybridization to determine overlapping gene expression in whole-mount mouse embryos.	Dev Dyn	2013
23303299	The Xenbase literature curation process.	Database (Oxford)	2013
22956101	Antibody development and use in chromogenic and fluorescent immunostaining.	Methods Mol Biol	2012
23264475	Photoreception and signal transduction in corals: proteomic and behavioral evidence for cytoplasmic calcium as a mediator of light responsivity.	Biol Bull	2012
22956102	Multicolor fluorescent in situ mRNA hybridization (FISH) on whole mounts and sections.	Methods Mol Biol	2012
21465621	Non-canonical wnt signals antagonize and canonical wnt signals promote cell proliferation in early kidney development.	Dev Dyn	2011
21949855	Circadian cycles of gene expression in the coral, Acropora millepora.	PLoS One	2011
19884130	Xenbase: gene expression and improved integration.	Nucleic Acids Res	2010
20431018	The genome of the Western clawed frog Xenopus tropicalis.	Science	2010
19100832	Requirement of Wnt/beta-catenin signaling in pronephric kidney development.	Mech Dev	2009
19366924	Transcriptome analysis of the circadian regulatory network in the coral Acropora millepora.	Biol Bull	2009
19498377	Multichannel wholemount fluorescent and fluorescent/chromogenic in situ hybridization in Xenopus embryos.	Nat Protoc	2009
17984085	Xenbase: a Xenopus biology and genomics resource.	Nucleic Acids Res	2008
18817563	An ontology for Xenopus anatomy and development.	BMC Dev Biol	2008
18226983	Collectrin/tmem27 is expressed at high levels in all segments of the developing Xenopus pronephric nephron and in the Wolffian duct.	Gene Expr Patterns	2008
17366623	Projecting 2D gene expression data into 3D and 4D space.	Dev Dyn	2007
16872594	FGF is essential for both condensation and mesenchymal-epithelial transition stages of pronephric kidney tubule development.	Dev Biol	2006
15712278	Pronephric regulation of acid-base balance; coexpression of carbonic anhydrase type 2 and sodium-bicarbonate cotransporter-1 in the late distal segment.	Dev Dyn	2005
15895368	Nephrin expression and three-dimensional morphogenesis of the Xenopus pronephric glomus.	Dev Dyn	2005

1 - 50 of 78

Daniela Raciti

California Institute of Technology

Career Start Year 2007

Number of shared co-authors 12

Eric R??ttinger

Universite Cote d'Azur-CNRS-Inserm-Institute for Research on Cancer and Ageing

Career Start Year 2004

Number of shared co-authors 3

Vincenzo Cavalieri

CNR-Istituto per la Protezione Sostenibile delle Piante

Career Start Year 2003

Number of shared co-authors 3

Celina E Juliano

University of California davis

Career Start Year 2002

Number of shared co-authors 3

Bingbing Yuan

Whitehead Institute for Biomedical Research

Career Start Year 2000

Number of shared co-authors 1

Albert J Poustka

Max-Planck-Institut fur Molekulare Genetik

Career Start Year 1999

Number of shared co-authors 4

Florian Raible

University of Vienna

Career Start Year 1999

Number of shared co-authors 3

Yi-Hsien Su

Institute of Cellular and Organismic Biology

Career Start Year 1998

Number of shared co-authors 3

Amy Singer

The Institute of Neuroscience, University of Oregon

Career Start Year 1998

Number of shared co-authors 3

Annamaria Locascio

Instituto Cajal

Career Start Year 1996

Number of shared co-authors 3

John Calley

Lilly Research Laboratories

Career Start Year 1995

Number of shared co-authors 0

Paola Oliveri

University College London

Career Start Year 1994

Number of shared co-authors 3

Robert A Cornell

University of Iowa

Career Start Year 1994

Number of shared co-authors 1

Charles A Whittaker

Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology

Career Start Year 1993

Number of shared co-authors 6

Ferenc M??ller

University of Birmingham

Career Start Year 1992

Number of shared co-authors 2

Yukiko Yamazaki

University of Fukui

Career Start Year 1990

Number of shared co-authors 6

Vincent Laudet

Okinawa Institute of Science and Technology

Career Start Year 1989

Number of shared co-authors 2

Maria Ina Arnone

CTO Hospital

Career Start Year 1988

Number of shared co-authors 3

Susan Tweedie

European Bioinformatics Institute

Career Start Year 1987

Number of shared co-authors 8

James A Coffman

University of Maine

Career Start Year 1984

Number of shared co-authors 3

Christopher V E Wright

Vanderbilt University

Career Start Year 1983

Number of shared co-authors 1

Duncan Davidson

Institute of Cancer and Genetics, University of Edinburgh

Career Start Year 1983

Number of shared co-authors 8

Gary M Wessel

Brown University

Career Start Year 1981

Number of shared co-authors 3

Ann M Flenniken

Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital

Career Start Year 1980

Number of shared co-authors 4

Richard L Maas

Brigham and Women's Hospital, Harvard Medical School

Career Start Year 1980

Number of shared co-authors 1

Craig R Tomlinson

Norris Cotton Cancer Center, Geisel School of Medicine at Dartmouth

Career Start Year 1980

Number of shared co-authors 1

Itai Yanai

Institute for Systems Genetics NYU Grossman School of Medicine

Career Start Year 1977

Number of shared co-authors 1

William H Klein

Columbia University

Career Start Year 1972

Number of shared co-authors 3

Thomas Brody

National Institutes of Health (NIH)

Career Start Year 1970

Number of shared co-authors 4

Mario R Capecchi

University of Utah School of Medicine

Career Start Year 1965

Number of shared co-authors 1

row(s) 1 - 30 of 30

Aaron M Zorn

Cincinnati Children's Hospital Medical Center

Co-authored papers 16

Christina James-Zorn

Cincinnati Children's Hospital Medical Center

Co-authored papers 12

Virgilio G Ponferrada

Cincinnati Children's Hospital Medical Center

Co-authored papers 11

Erik Segerdell

Cincinnati Children's Hospital Medical Center

Co-authored papers 9

Troy J Pells

University of Calgary

Co-authored papers 8

John B Wallingford

University of Texas

Co-authored papers 7

Malcolm Fisher

Cincinnati Children's Hospital Medical Center

Co-authored papers 5

Charles A Ettensohn

Carnegie Mellon University

Co-authored papers 2

Wasila M Dahdul

University of California irvine

Co-authored papers 2

Monte Westerfield

Institute of Neuroscience, University of Oregon

Co-authored papers 2

Shengqiang Shu

US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory

Co-authored papers 2

Robert W Thacker

Stony Brook University

Co-authored papers 1

Jose Fernandez-Triana

Agriculture and Agri-Food Canada

Co-authored papers 1

Ali H Brivanlou

the Rockefeller University

Co-authored papers 1

Nizar Ibrahim

University of Portsmouth

Co-authored papers 1

Andrew R Deans

The Pennsylvania State University, University Park

Co-authored papers 1

Anne E Thessen

Biodiversity Information Standards, Coastal and Estuarine Research Federation, Oregon State University, Phycological Society of America, Society of Professional Consultants, The Data Detektiv, University of Colorado Anschutz Medical Campus, University of Maryland College Park, Women in the Enterprise of Science and Technology

Co-authored papers 1

Michael Ashburner

University of Cambridge

Co-authored papers 1

Sven Heinz

U.C. San Diego School of Medicine

Co-authored papers 1

Anne E Kwitek

Medical College of Wisconsin

Co-authored papers 1

Douglas A Melton

Harvard University, Howard Hughes Medical Institute, Harvard Stem Cell Institute