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Author Details

Nicole Vasilevsky
Critical Path Institute
2011
48
20
PMIDPaper TitleJournal TitlePublished Year
38000386The Monarch Initiative in 2024: an analytic platform integrating phenotypes, genes and diseases across species.Nucleic Acids Res2024
38000386The Monarch Initiative in 2024: an analytic platform integrating phenotypes, genes and diseases across species.Nucleic Acids Res2024
37953324The Human Phenotype Ontology in 2024: phenotypes around the world.Nucleic Acids Res2024
37953324The Human Phenotype Ontology in 2024: phenotypes around the world.Nucleic Acids Res2024
36823605The Environmental Conditions, Treatments, and Exposures Ontology (ECTO): connecting toxicology and exposure to human health and beyond.J Biomed Semantics2023
37963467The Medical Action Ontology: A tool for annotating and analyzing treatments and clinical management of human disease.Med2023
36823605The Environmental Conditions, Treatments, and Exposures Ontology (ECTO): connecting toxicology and exposure to human health and beyond.J Biomed Semantics2023
37076585The Ontology of Biological Attributes (OBA)-computational traits for the life sciences.Mamm Genome2023
36747660The Ontology of Biological Attributes (OBA) - Computational Traits for the Life Sciences.bioRxiv2023
37503136The Medical Action Ontology: A Tool for Annotating and Analyzing Treatments and Clinical Management of Human Disease.medRxiv2023
37963467The Medical Action Ontology: A tool for annotating and analyzing treatments and clinical management of human disease.Med2023
37503136The Medical Action Ontology: A Tool for Annotating and Analyzing Treatments and Clinical Management of Human Disease.medRxiv2023
37076585The Ontology of Biological Attributes (OBA)-computational traits for the life sciences.Mamm Genome2023
36747660The Ontology of Biological Attributes (OBA) - Computational Traits for the Life Sciences.bioRxiv2023
36128559BOSC 2022: the first hybrid and 23rd annual Bioinformatics Open Source Conference.F1000Res2022
35705716The GA4GH Phenopacket schema defines a computable representation of clinical data.Nat Biotechnol2022
36208225Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies.Database (Oxford)2022
35872606Prenatal phenotyping: A community effort to enhance the Human Phenotype Ontology.Am J Med Genet C Semin Med Genet2022
35616100A Simple Standard for Sharing Ontological Mappings (SSSOM).Database (Oxford)2022
36128559BOSC 2022: the first hybrid and 23rd annual Bioinformatics Open Source Conference.F1000Res2022
35616100A Simple Standard for Sharing Ontological Mappings (SSSOM).Database (Oxford)2022
35705716The GA4GH Phenopacket schema defines a computable representation of clinical data.Nat Biotechnol2022
35872606Prenatal phenotyping: A community effort to enhance the Human Phenotype Ontology.Am J Med Genet C Semin Med Genet2022
36208225Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies.Database (Oxford)2022
32619202Effects of Hydrastis Canadensis, Commiphora Habessinica, Phytolacca Americana, and Echinacea Purpurea on Bacterial Growth.Altern Ther Health Med2021
33494105The landscape of nutri-informatics: a review of current resources and challenges for integrative nutrition research.Database (Oxford)2021
32602379Is authorship sufficient for today's collaborative research? A call for contributor roles.Account Res2021
32619202Effects of Hydrastis Canadensis, Commiphora Habessinica, Phytolacca Americana, and Echinacea Purpurea on Bacterial Growth.Altern Ther Health Med2021
33264411The Human Phenotype Ontology in 2021.Nucleic Acids Res2021
34697637OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies.Database (Oxford)2021
33494105The landscape of nutri-informatics: a review of current resources and challenges for integrative nutrition research.Database (Oxford)2021
34697637OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies.Database (Oxford)2021
33264411The Human Phenotype Ontology in 2021.Nucleic Acids Res2021
32602379Is authorship sufficient for today's collaborative research? A call for contributor roles.Account Res2021
33188371Guidelines for reporting single-cell RNA-seq experiments.Nat Biotechnol2020
32019583Significantly different clinical phenotypes associated with mutations in synthesis and transamidase+remodeling glycosylphosphatidylinositol (GPI)-anchor biosynthesis genes.Orphanet J Rare Dis2020
33369481Community Approaches for Integrating Environmental Exposures into Human Models of Disease.Environ Health Perspect2020
33188371Guidelines for reporting single-cell RNA-seq experiments.Nat Biotechnol2020
32019583Significantly different clinical phenotypes associated with mutations in synthesis and transamidase+remodeling glycosylphosphatidylinositol (GPI)-anchor biosynthesis genes.Orphanet J Rare Dis2020
33369481Community Approaches for Integrating Environmental Exposures into Human Models of Disease.Environ Health Perspect2020
30476213Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources.Nucleic Acids Res2019
31735951Representing glycophenotypes: semantic unification of glycobiology resources for disease discovery.Database (Oxford)2019
31766582The Hearing Impairment Ontology: A Tool for Unifying Hearing Impairment Knowledge to Enhance Collaborative Research.Genes (Basel)2019
30476213Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources.Nucleic Acids Res2019
30841755Effect of impact factor and discipline on journal data sharing policies.Account Res2019
31479590Encoding Clinical Data with the Human Phenotype Ontology for Computational Differential Diagnostics.Curr Protoc Hum Genet2019
31766582The Hearing Impairment Ontology: A Tool for Unifying Hearing Impairment Knowledge to Enhance Collaborative Research.Genes (Basel)2019
31735951Representing glycophenotypes: semantic unification of glycobiology resources for disease discovery.Database (Oxford)2019
31479590Encoding Clinical Data with the Human Phenotype Ontology for Computational Differential Diagnostics.Curr Protoc Hum Genet2019
30841755Effect of impact factor and discipline on journal data sharing policies.Account Res2019
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Collaborators

Melissa A Haendel
American Medical Informatics Association, Oregon Health and Science University, Oregon State University, University of Colorado Anschutz Medical Campus, University of North Carolina at Chapel Hill, University of Wisconsin-Madison
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Melissa A Haendel
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Christopher J Mungall
International Society for Biocuration, Lawrence Berkeley National Laboratory, University of Edinburgh, University of Edinburgh School of Biological Sciences
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Julie A McMurry
University of Colorado - Anschutz Medical Campus
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Peter N Robinson
William Harvey Research Institute, Queen Mary University of London
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Sebastian K??hler
Division of Emergency Medicine University of Calgary Calgary Alberta Canada.
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Damian Smedley
William Harvey Research Institute, Queen Mary University of London
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Matthew H Brush
University of Colorado Anschutz Medical Campus
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Nomi L Harris
Lawrence Berkely National Laboratory, Massachusetts Institute of Technology, Princeton University
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Monica C Munoz-Torres
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Julius O B Jacobsen
William Harvey Research Institute, Queen Mary University of London
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James P Balhoff
Renaissance Computing Institute, University of North Carolina
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Leigh C Carmody
Center for the Science of Therapeutics, Broad Institute of MIT and Harvard
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Perth Children's Hospital
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David Osumi-Sutherland
European Bioinformatics Institute
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Nicole L Washington
Renaissance Computing Institute, University of North Carolina
Co-authored papers 8
Michael Gargano
Co-authored papers 7
Jean-Philippe Gourdine
Oregon Health & Science University
Co-authored papers 6
Daniel Danis
Biomedical Research Center, Slovak Academy of Sciences
Co-authored papers 6
Susan M Bello
School of Pharmacy, University of Wisconsin
Co-authored papers 6
Kent Shefchek
University of Colorado Anschutz Medical Campus
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Anne E Thessen
Biodiversity Information Standards, Coastal and Estuarine Research Federation, Oregon State University, Phycological Society of America, Society of Professional Consultants, The Data Detektiv, University of Colorado Anschutz Medical Campus, University of Maryland College Park, Women in the Enterprise of Science and Technology
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Seth Carbon
Lawrence Berkeley National Laboratory
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Gareth Baynam
King Edward Memorial Hospital
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Hannah Blau
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Christopher G Chute
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Release 1.2