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Author Details

Johanna Klughammer
CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences
2013
23
17
Nathan Sheffield (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36797494TACCO unifies annotation transfer and decomposition of cell identities for single-cell and spatial omics.Nat Biotechnol2023
38024240Radiomic features define risk and are linked to DNA methylation attributes in primary CNS lymphoma.Neurooncol Adv2023
36993643Inference of single cell profiles from histology stains with the Single-Cell omics from Histology Analysis Framework (SCHAF).bioRxiv2023
37473725What do you most hope spatial molecular profiling will help us understand? Part 2.Cell Syst2023
36646694Comparative analysis of genome-scale, base-resolution DNA methylation profiles across 580 animal species.Nat Commun2023
35145087SM-Omics is an automated platform for high-throughput spatial multi-omics.Nat Commun2022
34594037Epigenetic encoding, heritability and plasticity of glioma transcriptional cell states.Nat Genet2021
33509999Expansion sequencing: Spatially precise in situ transcriptomics in intact biological systems.Science2021
34493871Genomic and phenotypic insights from an atlas of genetic effects on DNA methylation.Nat Genet2021
31501547High-definition spatial transcriptomics for in situ tissue profiling.Nat Methods2019
29445184Parental micronutrient deficiency distorts liver DNA methylation and expression of lipid genes associated with a fatty-liver-like phenotype in offspring.Sci Rep2018
30150718The DNA methylation landscape of glioblastoma disease progression shows extensive heterogeneity in time and space.Nat Med2018
27916275Artemisinins Target GABA<sub>A</sub> Receptor Signaling and Impair α Cell Identity.Cell2017
28134926DNA methylation heterogeneity defines a disease spectrum in Ewing sarcoma.Nat Med2017
28081260Comparative Genome Sequencing Reveals Within-Host Genetic Changes in Neisseria meningitidis during Invasive Disease.PLoS One2017
28099430Pooled CRISPR screening with single-cell transcriptome readout.Nat Methods2017
26691212Single-cell transcriptomes reveal characteristic features of human pancreatic islet cell types.EMBO Rep2016
27867036DNA Methylation Dynamics of Human Hematopoietic Stem Cell Differentiation.Cell Stem Cell2016
27538787Paternal chronic colitis causes epigenetic inheritance of susceptibility to colitis.Sci Rep2016
27492475Specification of tissue-resident macrophages during organogenesis.Science2016
25732828Single-cell DNA methylome sequencing and bioinformatic inference of epigenomic cell-state dynamics.Cell Rep2015
26673328Differential DNA Methylation Analysis without a Reference Genome.Cell Rep2015
23883523Divergent expression regulation of gonad development genes in medaka shows incomplete conservation of the downstream regulatory network of vertebrate sex determination.Mol Biol Evol2013
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Collaborators

Christoph Bock
CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences
Co-authored papers 13
Matthias Farlik
CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences
Co-authored papers 7
Paul Datlinger
CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences
Co-authored papers 6
Aviv Regev
Broad Institute of MIT and Harvard
Co-authored papers 6
Orit Rozenblatt-Rosen
Co-authored papers 5
Nathan Sheffield (CM4AI)
University of Virginia
Co-authored papers 4
Amelie Nemc
CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences
Co-authored papers 3
Waltraud Kleindienst
Paracelsus Medical University Salzburg
Co-authored papers 2
Franz Marhold
Karl Landsteiner University of Health Sciences
Co-authored papers 2
Nikolaus Fortelny
University of Salzburg
Co-authored papers 2
Dieter Printz
Children's Cancer Research Institute
Co-authored papers 2
Georg Widhalm
Medical University of Vienna
Co-authored papers 2
Don??t Alp??r
Semmelweis University
Co-authored papers 2
Johannes Haybaeck
Institute of Pathology, Medical University of Innsbruck
Co-authored papers 2
Claudius Thom??
Medical University Innsbruck
Co-authored papers 2
Andreas Sch??negger
CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences
Co-authored papers 2
Adelheid Woehrer
Medical University of Vienna
Co-authored papers 2
Christian F Freyschlag
Medical University of Innsbruck
Co-authored papers 2
Barbara Kiesel
Medical University of Vienna
Co-authored papers 2
Stefan Kubicek
CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences
Co-authored papers 2
Tanisa Brandner-Kokalj
Institute of Pathology, State Hospital Klagenfurt
Co-authored papers 2
Christian Schmidl
Leibniz Institute for Immunotherapy
Co-authored papers 2
Bekir Erg??ner
CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences
Co-authored papers 2
Johanna Hadler
Flinders University, Flinders Medical Centre
Co-authored papers 2
Michal Slyper
Co-authored papers 2
G??nther Stockhammer
Medical University of Innsbruck
Co-authored papers 2
Patrizia Moser
Medical University of Innsbruck
Co-authored papers 2
Julia Furtner
Medical University of Vienna
Co-authored papers 2
Serge Weis
Kepler University Hospital, Johannes Kepler University
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Julia Waldman
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Release 1.2