Author details

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Full Name

Yoichi Murakami

Affiliation

ORCID

Career Start Year

2006

Papers

16

H Index

10

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36589735	Recent developments of sequence-based prediction of protein-protein interactions.		2022
32148150	Update of the GRIP web service.	Journal of Receptor and Signal Transduction Research	2020
29186632	Integrating sequence and gene expression information predicts genome-wide DNA-binding proteins and suggests a cooperative mechanism.	Nucleic Acids Research	2018
28364585	Network analysis and in silico prediction of protein-protein interactions with applications in drug discovery.	Current Opinion in Structural Biology	2017
27530928	NLDB: a database for 3D protein-ligand interactions in enzymatic reactions.	Journal of Structural and Functional Genomics	2016
24953126	Homology-based prediction of interactions between proteins using Averaged One-Dependence Estimators.	BMC Bioinformatics	2014
24155158	Blind prediction of interfacial water positions in CAPRI.	Proteins	2014
24997568	Brefeldin A-inhibited guanine nucleotide-exchange protein 3 (BIG3) is predicted to interact with its partner through an ARM-type Î±-helical structure.	BMC Research Notes	2014
24051437	Targeting BIG3-PHB2 interaction to overcome tamoxifen resistance in breast cancer cells.	Nat Commun	2013
23934772	Exhaustive comparison and classification of ligand-binding surfaces in proteins.	Protein Sci	2013
20507911	PiRaNhA: a server for the computational prediction of RNA-binding residues in protein sequences.	Nucleic Acids Res	2010
20529890	Applying the NaÃ¯ve Bayes classifier with kernel density estimation to the prediction of protein-protein interaction sites.		2010
19389733	Protein function annotation from sequence: prediction of residues interacting with RNA.	Bioinformatics	2009
17803239	Docking of protein molecular surfaces with evolutionary trace analysis.	Proteins	2007
17567616	eF-seek: prediction of the functional sites of proteins by searching for similar electrostatic potential and molecular surface shape.	Nucleic Acids Res	2007
16672257	SHARP2: protein-protein interaction predictions using patch analysis.		2006

1 - 16 of 16

Haruki Nakamura

Institute for Protein Research, Osaka University

Co-authored papers 6

Kengo Kinoshita

Co-authored papers 5

Co-authored papers 2

Co-authored papers 2

Daron M Standley

Osaka university

Co-authored papers 2

University of Massachusetts Medical School

Co-authored papers 1

Co-authored papers 1

Petras J Kundrotas

The University of Kansas

Co-authored papers 1

Panagiotis L Kastritis

Interdisciplinary Research Center HALOmem, Martin Luther University Halle-Wittenberg

Co-authored papers 1

GSK Medicines Research Centre

Co-authored papers 1

Krishna Praneeth Kilambi

Co-authored papers 1

Brian Jim??nez-Garc??a

Utrecht University

Co-authored papers 1

Julie C Mitchell

Co-authored papers 1

The University of Kansas

Co-authored papers 1

Dalton Cardiovascular Research Center, University of Missouri

Co-authored papers 1

Matthieu Chavent

Co-authored papers 1

Adrien S J Melquiond

Oncode Institute & Hubrecht Institute-KNAW and University Medical Center Utrecht

Co-authored papers 1

Visterra Inc.

Co-authored papers 1

Georgy Derevyanko

Co-authored papers 1

Martin Zacharias

Co-authored papers 1

Dokuz Eylul University

Co-authored papers 1

Co-authored papers 1

University of Maryland Institute for Bioscience and Biotechnology Research

Co-authored papers 1

Junsu Ko

Co-authored papers 1

Yusuke Nakamura

Japanese Foundation for Cancer Research

Co-authored papers 1

Co-authored papers 1

Huan-Xiang Zhou

University of Illinois Chicago

Co-authored papers 1

Co-authored papers 1

Sheng-You Huang

Huazhong University of Science and Technology

Co-authored papers 1

Jamica Sarmiento

Co-authored papers 1

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