Author details

Full Name

Andr?? Kahles

Affiliation

ETH Zurich

ORCID

Career Start Year

2010

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36697831	Author Correction: Genomic basis for RNA alterations in cancer.	Nature	2023
37072187	Aligning distant sequences to graphs using long seed sketches.	Genome Res	2023
36697832	Author Correction: Analyses of non-coding somatic drivers in 2,658 cancer whole genomes.	Nature	2023
36299999	A history of the MetaSUB consortium: Tracking urban microbes around the globe.	iScience	2022
35732736	Biosynthetic potential of the global ocean microbiome.	Nature	2022
35609994	Lossless indexing with counting de Bruijn graphs.	Genome Res	2022
35751815	Identification, Quantification, and Testing of Alternative Splicing Events from RNA-Seq Data Using SplAdder.	Methods Mol Biol	2022
35776515	RNA Instant Quality Check: Alignment-Free RNA-Degradation Detection.	J Comput Biol	2022
35900151	SECEDO: SNV-based subclone detection using ultra-low coverage single-cell DNA sequencing.	Bioinformatics	2022
34252940	Topology-based sparsification of graph annotations.	Bioinformatics	2021
32591764	Publisher Correction: Building an international consortium for tracking coronavirus health status.	Nat Med	2020
31891531	Sparse Binary Relation Representations for Genome Graph Annotation.	J Comput Biol	2020
33424794	NGS-Based <i>S. aureus</i> Typing and Outbreak Analysis in Clinical Microbiology Laboratories: Lessons Learned From a Swiss-Wide Proficiency Test.	Front Microbiol	2020
31491388	A Pan-cancer Transcriptome Analysis Reveals Pervasive Regulation through Alternative Promoters.	Cell	2019
30020403	Dynamic compression schemes for graph coloring.	Bioinformatics	2019
30078747	Comprehensive Analysis of Alternative Splicing Across Tumors from 8,705 Patients.	Cancer Cell	2018
28179367	Genomic Rearrangements in <i>Arabidopsis</i> Considered as Quantitative Traits.	Genetics	2017
26873928	SplAdder: identification, quantification and testing of alternative splicing events from RNA-Seq data.	Bioinformatics	2016
26519503	MMR: a tool for read multi-mapper resolution.	Bioinformatics	2016
27803310	Alternative Splicing Substantially Diversifies the Transcriptome during Early Photomorphogenesis and Correlates with the Energy Availability in Arabidopsis.	Plant Cell	2016
25592567	Integrative genome-wide analysis of the determinants of RNA splicing in kidney renal clear cell carcinoma.	Pac Symp Biocomput	2015
25939354	DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation.	Elife	2015
24413671	Oqtans: the RNA-seq workbench in the cloud for complete and reproducible quantitative transcriptome analysis.	Bioinformatics	2014
23585274	Accurate detection of differential RNA processing.	Nucleic Acids Res	2013
24185836	Systematic evaluation of spliced alignment programs for RNA-seq data.	Nat Methods	2013
24244403	Excap: maximization of haplotypic diversity of linked markers.	PLoS One	2013
24163313	Nonsense-mediated decay of alternative precursor mRNA splicing variants is a major determinant of the Arabidopsis steady state transcriptome.	Plant Cell	2013
23980025	MITIE: Simultaneous RNA-Seq-based transcript identification and quantification in multiple samples.	Bioinformatics	2013
22614838	Multiple insert size paired-end sequencing for deconvolution of complex transcriptomes.	RNA Biol	2012
23192226	Polypyrimidine tract binding protein homologs from Arabidopsis are key regulators of alternative splicing with implications in fundamental developmental processes.	Plant Cell	2012
21874022	Multiple reference genomes and transcriptomes for Arabidopsis thaliana.	Nature	2011
21154708	RNA-Seq read alignments with PALMapper.	Curr Protoc Bioinformatics	2010

1 - 32 of 32

Elizabeth Tseng

University of Washington

Career Start Year 2014

Number of shared co-authors 0

David Tse

Stanford University

Career Start Year 2013

Number of shared co-authors 0

Ibrahim Numanagi??

University of Victoria

Career Start Year 2012

Number of shared co-authors 1

Shaun D Jackman

University of British Columbia

Career Start Year 2009

Number of shared co-authors 10

Tobias Marschall

Center for Digital Medicine, Heinrich Heine University Dusseldorf

Career Start Year 2009

Number of shared co-authors 6

Christopher Wilks

Johns Hopkins University

Career Start Year 2008

Number of shared co-authors 1

Abhinav Nellore

Oregon Health & Science University

Career Start Year 2008

Number of shared co-authors 0

Juan Caballero

European Bioinformatics Institute (EMBL-EBI)

Career Start Year 2008

Number of shared co-authors 0

Anne-Katrin Emde

Variant Bio Inc.

Career Start Year 2006

Number of shared co-authors 6

Stephan Ossowski

Institute of Medical Genetics and Applied Genomics, University of Tubingen

Career Start Year 2006

Number of shared co-authors 7

Daniel R Zerbino

European Bioinformatics Institute

Career Start Year 2005

Number of shared co-authors 6

Benedict Paten

UC Santa Cruz Genomics Institute, University of California

Career Start Year 2005

Number of shared co-authors 14

Carl Kingsford

Carnegie Mellon University

Career Start Year 2005

Number of shared co-authors 0

Michael C Schatz

Johns Hopkins University

Career Start Year 2004

Number of shared co-authors 8

Timo Lassmann

Telethon Kids Institute, University of Western Australia

Career Start Year 2002

Number of shared co-authors 2

Suleyman Cenk Sahinalp

National Cancer Institute, National Institutes of Health

Career Start Year 2001

Number of shared co-authors 2

Martin C Frith

Artificial Intelligence Research Center, University of Tokyo

Career Start Year 2001

Number of shared co-authors 0

Brent S Pedersen

Center for Molecular Medicine, University Medical Center Utrecht

Career Start Year 2001

Number of shared co-authors 1

Carrie A Davis

Stanford University

Career Start Year 2000

Number of shared co-authors 5

Michael Brudno

University of Toronto

Career Start Year 2000

Number of shared co-authors 8

Faraz Hach

University of British Columbia

Career Start Year 1999

Number of shared co-authors 2

Eric Banks

Broad Institute of MIT and Harvard

Career Start Year 1999

Number of shared co-authors 5

Vineet Bafna

University of California San Diego

Career Start Year 1998

Number of shared co-authors 2

Ian Korf

University of California davis

Career Start Year 1998

Number of shared co-authors 6

Knut Reinert

Institut fur Informatik, Freie Universitat Berlin

Career Start Year 1998

Number of shared co-authors 2

Mark D Robinson

University of Zurich

Career Start Year 1997

Number of shared co-authors 7

Stefano Lonardi

University of California Riverside

Career Start Year 1996

Number of shared co-authors 1

Ewan Birney

European Bioinformatics Institute

Career Start Year 1992

Number of shared co-authors 21

Jean-Pierre A Kocher

Mayo Clinic

Career Start Year 1991

Number of shared co-authors 2

Brian J Haas

Broad Institute of MIT and Harvard

Career Start Year 1981

Number of shared co-authors 5

row(s) 1 - 30 of 30

Gunnar R??tsch

ETH Zurich

Co-authored papers 27

Oliver Stegle

Wellcome Sanger Institute

Co-authored papers 8

Mikhail Karasikov

Co-authored papers 5

Nuno A Fonseca

European Bioinformatics Institute

Co-authored papers 3

Chris Sander

Broad Institute of MIT and Harvard

Co-authored papers 2

Richard Mott

Co-authored papers 2

Georg Zeller

Max Planck Institute for Developmental Biology

Co-authored papers 2

Angela Brooks-Wilson

Co-authored papers 2

Alvis Brazma

European Bioinformatics Institute

Co-authored papers 2

Magnus Nordborg

Co-authored papers 2

Natalie R Davidson

University of Colorado Anschutz School of Medicine

Co-authored papers 2

Xihong Lin

Harvard T.H. Chan School of Public Health

Co-authored papers 1

Liis Uusk??la-Reimand

SickKids Research Institute

Co-authored papers 1

Feng Zhang

Massachusetts Institute of Technology, USA Broad Institute

Co-authored papers 1

Silvano Coletti

Co-authored papers 1

Ayya Keshet

Weizmann Institute of Science

Co-authored papers 1

Paul Bertone

Co-authored papers 1

Lucas Lochovsky

Co-authored papers 1

Tieliu Shi

Co-authored papers 1

William E Allen

Harvard University

Co-authored papers 1

Ran D Balicer

Clalit Health Services, Ben Gurion University

Co-authored papers 1

Lars Feuerbach

German Cancer Research Center (DKFZ)

Co-authored papers 1

Ximena Bonilla

ETH Zurich, University Hospital Zurich

Co-authored papers 1

Gregory Landua

Co-authored papers 1

Christophe Dessimoz

University of Lausanne

Co-authored papers 1

Matthew Meyerson

Broad Institute

Co-authored papers 1

Abel Gonzalez-Perez

Universitat Pompeu Fabra

Co-authored papers 1

Shimin Shuai

Southeast University

Co-authored papers 1

William Lee

Co-authored papers 1

David A Drew

Massachusetts General Hospital and Harvard Medical School

Co-authored papers 1

1 - 30

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